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GEO accession:
Sample GSM46850
Query DataSets for GSM46850
Status
Public on Mar 31, 2005
Title
Lung - 22208
Sample type
RNA
Source name
Lung
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 32
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 1B
Pathological Grade: 3
Primary Site: Lung
Histology: Squamous cell carcinoma
Submission date
Mar 31, 2005
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
ecurley@intgen.org
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE60486
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
818.6
P
0.000662
AFFX-BioB-M_at
1181.3
P
4.4e-005
AFFX-BioB-3_at
578.7
P
6e-005
AFFX-BioC-5_at
2183.2
P
4.4e-005
AFFX-BioC-3_at
2578
P
4.4e-005
AFFX-BioDn-5_at
5557.2
P
4.4e-005
AFFX-BioDn-3_at
9450.2
P
5.2e-005
AFFX-CreX-5_at
22725.5
P
5.2e-005
AFFX-CreX-3_at
27842.6
P
4.4e-005
AFFX-DapX-5_at
46.3
A
0.205732
AFFX-DapX-M_at
29.3
A
0.724854
AFFX-DapX-3_at
12.6
A
0.631562
AFFX-LysX-5_at
18.8
A
0.544587
AFFX-LysX-M_at
23.1
A
0.58862
AFFX-LysX-3_at
54.6
P
0.042962
AFFX-PheX-5_at
5.7
A
0.783496
AFFX-PheX-M_at
3
A
0.945787
AFFX-PheX-3_at
80.5
A
0.227636
AFFX-ThrX-5_at
3.1
A
0.932322
AFFX-ThrX-M_at
2
A
0.995983
Total number of rows:
54675
Table truncated, full table size
1446 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM46850.CEL.gz
8.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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