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Sample GSM46832 Query DataSets for GSM46832
Status Public on Mar 31, 2005
Title Colon - 1315
Sample type RNA
 
Source name Colon
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 15
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: is
Pathological N: 0
Pathological M: 0
Pathological Stage: 0
Primary Site: Colon
Histology: Carcinoma in situ arising in a villous adenoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 731.1 P 0.000754
AFFX-BioB-M_at 885.7 P 5.2e-005
AFFX-BioB-3_at 388.3 P 0.000446
AFFX-BioC-5_at 1630.2 P 4.4e-005
AFFX-BioC-3_at 2254 P 5.2e-005
AFFX-BioDn-5_at 4211.2 P 4.4e-005
AFFX-BioDn-3_at 8145.9 P 4.4e-005
AFFX-CreX-5_at 19246.5 P 5.2e-005
AFFX-CreX-3_at 23917.8 P 4.4e-005
AFFX-DapX-5_at 32.9 A 0.250796
AFFX-DapX-M_at 7.4 A 0.783476
AFFX-DapX-3_at 72.5 P 0.028457
AFFX-LysX-5_at 22.1 A 0.165819
AFFX-LysX-M_at 30.8 A 0.724871
AFFX-LysX-3_at 31.4 A 0.123572
AFFX-PheX-5_at 4.6 A 0.973889
AFFX-PheX-M_at 3 A 0.981719
AFFX-PheX-3_at 32.7 A 0.544587
AFFX-ThrX-5_at 11.5 A 0.659339
AFFX-ThrX-M_at 5.7 A 0.84329

Total number of rows: 54675

Table truncated, full table size 1441 Kbytes.




Supplementary file Size Download File type/resource
GSM46832.CEL.gz 8.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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