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Sample GSM46829 Query DataSets for GSM46829
Status Public on Mar 31, 2005
Title Pelvic Lymph Node - 1310
Sample type RNA
 
Source name Pelvic lymph node
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 41-45
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 60
Pathological T: 4a
Pathological N: 2
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 3
Primary Site: Urinary Bladder
Histology: Urothelial (transitional cell) carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 398.4 P 0.000754
AFFX-BioB-M_at 534.3 P 4.4e-005
AFFX-BioB-3_at 227.1 P 0.004017
AFFX-BioC-5_at 881.3 P 6e-005
AFFX-BioC-3_at 1348.5 P 4.4e-005
AFFX-BioDn-5_at 2487.5 P 4.4e-005
AFFX-BioDn-3_at 4551 P 7e-005
AFFX-CreX-5_at 10685.8 P 4.4e-005
AFFX-CreX-3_at 14534 P 4.4e-005
AFFX-DapX-5_at 181.4 P 8.1e-005
AFFX-DapX-M_at 1082.5 P 0.000662
AFFX-DapX-3_at 2408.2 P 5.2e-005
AFFX-LysX-5_at 111.2 P 0.000857
AFFX-LysX-M_at 190.1 P 0.003595
AFFX-LysX-3_at 507.4 P 7e-005
AFFX-PheX-5_at 68.8 P 0.004998
AFFX-PheX-M_at 219.6 P 0.000297
AFFX-PheX-3_at 336.9 P 0.000972
AFFX-ThrX-5_at 51.5 M 0.062929
AFFX-ThrX-M_at 253.2 P 0.000754

Total number of rows: 54675

Table truncated, full table size 1441 Kbytes.




Supplementary file Size Download File type/resource
GSM46829.CEL.gz 8.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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