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Sample GSM46820 Query DataSets for GSM46820
Status Public on Mar 31, 2005
Title Breast - 1048
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.41
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 30
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: None
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 998 P 0.000297
AFFX-BioB-M_at 2001.6 P 4.4e-005
AFFX-BioB-3_at 1119.4 P 4.4e-005
AFFX-BioC-5_at 2967.9 P 4.4e-005
AFFX-BioC-3_at 3478.7 P 4.4e-005
AFFX-BioDn-5_at 8403.9 P 4.4e-005
AFFX-BioDn-3_at 13249.8 P 4.4e-005
AFFX-CreX-5_at 32691.7 P 4.4e-005
AFFX-CreX-3_at 37885.8 P 4.4e-005
AFFX-DapX-5_at 38.7 A 0.139482
AFFX-DapX-M_at 73.3 A 0.470238
AFFX-DapX-3_at 77.4 P 0.002867
AFFX-LysX-5_at 2.2 A 0.794349
AFFX-LysX-M_at 7.5 A 0.84329
AFFX-LysX-3_at 77.8 A 0.0727
AFFX-PheX-5_at 55.6 A 0.262827
AFFX-PheX-M_at 4.4 A 0.981719
AFFX-PheX-3_at 92.6 A 0.287743
AFFX-ThrX-5_at 5.8 A 0.783476
AFFX-ThrX-M_at 3.8 A 0.981719

Total number of rows: 54675

Table truncated, full table size 1444 Kbytes.




Supplementary file Size Download File type/resource
GSM46820.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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