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Sample GSM46816 Query DataSets for GSM46816
Status Public on Mar 31, 2005
Title Breast - 1017
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.5
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 5
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: Yes
Fibrocystic disease?: No
Mammogram calcifications?: No
Clinical T: 1c
Clinical N: 1
Clinical M: 0
Clinical Stage: 2A
Clinical Grade: 3
Clinical ER: Negative
Clinical PR: Negative
Clinical HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 683.1 P 0.000297
AFFX-BioB-M_at 1255.1 P 4.4e-005
AFFX-BioB-3_at 668.4 P 9.5e-005
AFFX-BioC-5_at 2103 P 4.4e-005
AFFX-BioC-3_at 2310 P 5.2e-005
AFFX-BioDn-5_at 5513 P 4.4e-005
AFFX-BioDn-3_at 9009.2 P 4.4e-005
AFFX-CreX-5_at 21642.2 P 4.4e-005
AFFX-CreX-3_at 26239 P 4.4e-005
AFFX-DapX-5_at 36.4 A 0.216524
AFFX-DapX-M_at 46.2 A 0.41138
AFFX-DapX-3_at 104.3 P 0.000972
AFFX-LysX-5_at 30.2 A 0.262827
AFFX-LysX-M_at 26.9 A 0.48511
AFFX-LysX-3_at 51.4 P 0.005565
AFFX-PheX-5_at 2.8 A 0.945787
AFFX-PheX-M_at 18.6 A 0.58862
AFFX-PheX-3_at 33.6 A 0.5
AFFX-ThrX-5_at 4.6 A 0.973889
AFFX-ThrX-M_at 63.6 A 0.089478

Total number of rows: 54675

Table truncated, full table size 1442 Kbytes.




Supplementary file Size Download File type/resource
GSM46816.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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