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Sample GSM465829 Query DataSets for GSM465829
Status Public on Jan 13, 2010
Title DFCI #129 10 ng rep2
Sample type RNA
 
Source name Human ovarian tumor
Organism Homo sapiens
Characteristics gender: female
tissue: ovarian tumor
cell type: DFCI 129
amount: 10 ng
Treatment protocol Formalin-fixed, paraffin-embedded.
Extracted molecule total RNA
Extraction protocol RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
Label Cy3
Label protocol Standard Illumina labelling protocol.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description replicate 2
Data processing Raw data was analyzed using GenomeStudio v1.1.

Non-normalized data is available in the 'GSE18769_nonorm_nobkgd.txt' file, which is linked to the Series GSE18769 record as a supplementary file.
 
Submission date Oct 27, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
GSE18769 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Dilutions

Data table header descriptions
ID_REF
VALUE quantile normalized
DFCI #129 10 ng rep2.Avg_NBEADS
DFCI #129 10 ng rep2.BEAD_STDERR
DFCI #129 10 ng rep2.Detection Pval

Data table
ID_REF VALUE DFCI #129 10 ng rep2.Avg_NBEADS DFCI #129 10 ng rep2.BEAD_STDERR DFCI #129 10 ng rep2.Detection Pval
ILMN_1762337 1581.039 38 79.46687 0
ILMN_2055271 743.8358 39 38.55364 0
ILMN_2383229 79.87131 37 4.764328 0.5631068
ILMN_1806310 82.64966 46 5.441023 0.5307443
ILMN_1779670 1127.066 36 41.69909 0
ILMN_2321282 227.5563 51 5.117057 0.04530744
ILMN_1772582 2262.188 36 99.31138 0
ILMN_1717783 734.1028 36 56.34912 0
ILMN_1814316 3996.894 37 102.9207 0
ILMN_2359168 3966.162 44 138.3694 0
ILMN_1731507 412.3774 36 21.91187 0.006472492
ILMN_1787689 172.2255 40 8.723791 0.1035599
ILMN_1745607 6318.62 50 199.4605 0
ILMN_2136495 45.64263 36 5.389612 0.9805825
ILMN_1668111 64.68578 37 7.418208 0.815534
ILMN_2295559 74.05928 52 5.614902 0.6472492
ILMN_1735045 1503.706 46 84.06542 0
ILMN_1680754 178.2864 24 12.80169 0.09708738
ILMN_2375184 149.3378 50 5.518404 0.1682848
ILMN_1659452 179.2457 48 9.082867 0.09385113

Total number of rows: 24526

Table truncated, full table size 934 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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