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Sample GSM465825 Query DataSets for GSM465825
Status Public on Jan 13, 2010
Title DFCI #129 1 ng rep2
Sample type RNA
 
Source name Human ovarian tumor
Organism Homo sapiens
Characteristics gender: female
tissue: ovarian tumor
cell type: DFCI 129
amount: 1 ng
Treatment protocol Formalin-fixed, paraffin-embedded.
Extracted molecule total RNA
Extraction protocol RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
Label Cy3
Label protocol Standard Illumina labelling protocol.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description replicate 2
Data processing Raw data was analyzed using GenomeStudio v1.1.

Non-normalized data is available in the 'GSE18769_nonorm_nobkgd.txt' file, which is linked to the Series GSE18769 record as a supplementary file.
 
Submission date Oct 27, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
GSE18769 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Dilutions

Data table header descriptions
ID_REF
VALUE quantile normalized
DFCI #129 1 ng rep2.Avg_NBEADS
DFCI #129 1 ng rep2.BEAD_STDERR
DFCI #129 1 ng rep2.Detection Pval

Data table
ID_REF VALUE DFCI #129 1 ng rep2.Avg_NBEADS DFCI #129 1 ng rep2.BEAD_STDERR DFCI #129 1 ng rep2.Detection Pval
ILMN_1762337 2549.965 49 27.90598 0
ILMN_2055271 2013.054 40 18.95705 0.003236246
ILMN_2383229 310.5467 35 4.093805 0.4174757
ILMN_1806310 299.5219 44 4.499726 0.4304207
ILMN_1779670 576.2743 40 5.409949 0.2524272
ILMN_2321282 1151.294 47 5.118443 0.06148867
ILMN_1772582 642.3766 34 5.634049 0.210356
ILMN_1717783 1966.568 31 21.2587 0.003236246
ILMN_1814316 120.4064 37 3.476448 0.6569579
ILMN_2359168 130.4207 29 4.599607 0.6375405
ILMN_1731507 202.6183 27 6.080173 0.5339806
ILMN_1787689 1062.477 33 7.229894 0.07119741
ILMN_1745607 5021.093 41 112.8923 0
ILMN_2136495 141.5965 42 5.462183 0.6245955
ILMN_1668111 173.2525 44 5.213339 0.5598705
ILMN_2295559 239.0594 55 3.253869 0.4854369
ILMN_1735045 113.9353 46 4.110652 0.6666667
ILMN_1680754 843.3446 24 7.350071 0.1197411
ILMN_2375184 236.0652 57 3.725948 0.4854369
ILMN_1659452 511.113 32 9.480684 0.2880259

Total number of rows: 24526

Table truncated, full table size 977 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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