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Sample GSM465821 Query DataSets for GSM465821
Status Public on Jan 13, 2010
Title DFCI #129 200 ng rep1
Sample type RNA
 
Source name Human ovarian tumor
Organism Homo sapiens
Characteristics gender: female
tissue: ovarian tumor
cell type: DFCI 129
amount: 200 ng
Treatment protocol Formalin-fixed, paraffin-embedded.
Extracted molecule total RNA
Extraction protocol RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
Label Cy3
Label protocol Standard Illumina labelling protocol.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description replicate 1
Data processing Raw data was analyzed using GenomeStudio v1.1.

Non-normalized data is available in the 'GSE18769_nonorm_nobkgd.txt' file, which is linked to the Series GSE18769 record as a supplementary file.
 
Submission date Oct 27, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
GSE18769 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Dilutions

Data table header descriptions
ID_REF
VALUE quantile normalized
DFCI #129 200 ng rep1.Avg_NBEADS
DFCI #129 200 ng rep1.BEAD_STDERR
DFCI #129 200 ng rep1.Detection Pval

Data table
ID_REF VALUE DFCI #129 200 ng rep1.Avg_NBEADS DFCI #129 200 ng rep1.BEAD_STDERR DFCI #129 200 ng rep1.Detection Pval
ILMN_1762337 3059.288 41 163.8127 0
ILMN_2055271 642.2677 27 29.5294 0
ILMN_2383229 66.96834 30 12.77604 0.6084142
ILMN_1806310 72.49162 38 12.32457 0.4854369
ILMN_1779670 104.4285 44 7.722502 0.1100324
ILMN_2321282 137.3456 41 10.7382 0.04854369
ILMN_1772582 1142.738 38 44.62885 0
ILMN_1717783 1093.526 37 52.65287 0
ILMN_1814316 5665.853 38 181.2279 0
ILMN_2359168 5628.67 33 218.0227 0
ILMN_1731507 141.7669 38 12.71994 0.04854369
ILMN_1787689 153.2748 29 10.90579 0.0420712
ILMN_1745607 7886.65 45 299.4631 0
ILMN_2136495 61.91545 37 10.51898 0.7184466
ILMN_1668111 93.56355 32 9.110445 0.1618123
ILMN_2295559 55.23735 42 7.030368 0.8899676
ILMN_1735045 1148.54 46 70.17127 0
ILMN_1680754 104.9644 29 13.44187 0.1067961
ILMN_2375184 79.71584 40 10.82306 0.3268608
ILMN_1659452 88.60198 50 6.804937 0.210356

Total number of rows: 24526

Table truncated, full table size 939 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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