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Sample GSM465807 Query DataSets for GSM465807
Status Public on Jan 13, 2010
Title DFCI #121/123 33/66 rep6
Sample type RNA
 
Source name Human ovarian tumor
Organism Homo sapiens
Characteristics gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 33% 121 / 66% 123
Treatment protocol Formalin-fixed, paraffin-embedded.
Extracted molecule total RNA
Extraction protocol RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
Label Cy3
Label protocol Standard Illumina labelling protocol.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description replicate 6
Data processing Raw data was analyzed using GenomeStudio v1.1.

Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
 
Submission date Oct 27, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
GSE18767 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios

Data table header descriptions
ID_REF
VALUE quantile normalized
DFCI #121/123 33/66 rep6.Avg_NBEADS
DFCI #121/123 33/66 rep6.BEAD_STDERR
DFCI #121/123 33/66 rep6.Detection Pval

Data table
ID_REF VALUE DFCI #121/123 33/66 rep6.Avg_NBEADS DFCI #121/123 33/66 rep6.BEAD_STDERR DFCI #121/123 33/66 rep6.Detection Pval
ILMN_1762337 2914.646 49 119.1536 0
ILMN_2055271 695.6892 30 26.63866 0
ILMN_2383229 143.9292 29 7.030526 0.04854369
ILMN_1806310 62.90329 48 6.187737 0.3624595
ILMN_1779670 934.6932 36 26.11979 0
ILMN_2321282 114.504 33 8.269876 0.06148867
ILMN_1772582 696.3027 38 32.82568 0
ILMN_1717783 178.8071 36 11.98973 0.03559871
ILMN_1814316 6928.511 34 142.8628 0
ILMN_2359168 6061.481 50 169.5054 0
ILMN_1731507 98.41409 30 7.949172 0.07119741
ILMN_1787689 105.7396 32 6.360799 0.06796116
ILMN_1745607 5548.822 49 190.3298 0
ILMN_2136495 44.13614 40 4.3596 0.8640777
ILMN_1668111 248.1643 34 11.27402 0.01294498
ILMN_2295559 126.1532 45 6.323533 0.05177994
ILMN_1735045 327.2166 41 17.51854 0.006472492
ILMN_1680754 77.92368 26 6.781641 0.1747573
ILMN_2375184 121.7809 40 6.449501 0.05501618
ILMN_1659452 121.2633 51 7.366088 0.05501618

Total number of rows: 24526

Table truncated, full table size 933 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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