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Status |
Public on Jan 13, 2010 |
Title |
DFCI #121/123 33/66 rep6 |
Sample type |
RNA |
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Source name |
Human ovarian tumor
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Organism |
Homo sapiens |
Characteristics |
gender: female tissue: ovarian tumor cell types: DFCI 121, DFCI 123 ratio mix: 33% 121 / 66% 123
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Treatment protocol |
Formalin-fixed, paraffin-embedded.
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Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
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Label |
Cy3
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Label protocol |
Standard Illumina labelling protocol.
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Hybridization protocol |
Standard Illumina hybridization protocol.
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Scan protocol |
Standard Illumina scanning protocol.
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Description |
replicate 6
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Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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Submission date |
Oct 27, 2009 |
Last update date |
Jan 13, 2010 |
Contact name |
Craig April |
E-mail(s) |
capril@illumina.com
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Organization name |
Illumina, Inc.
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Street address |
9885 Towne Centre Drive
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City |
San Diego |
State/province |
CA |
ZIP/Postal code |
92121-1975 |
Country |
USA |
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Platform ID |
GPL6883 |
Series (2) |
GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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Data table header descriptions |
ID_REF |
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VALUE |
quantile normalized |
DFCI #121/123 33/66 rep6.Avg_NBEADS |
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DFCI #121/123 33/66 rep6.BEAD_STDERR |
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DFCI #121/123 33/66 rep6.Detection Pval |
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Data table |
ID_REF |
VALUE |
DFCI #121/123 33/66 rep6.Avg_NBEADS |
DFCI #121/123 33/66 rep6.BEAD_STDERR |
DFCI #121/123 33/66 rep6.Detection Pval |
ILMN_1762337 |
2914.646 |
49 |
119.1536 |
0 |
ILMN_2055271 |
695.6892 |
30 |
26.63866 |
0 |
ILMN_2383229 |
143.9292 |
29 |
7.030526 |
0.04854369 |
ILMN_1806310 |
62.90329 |
48 |
6.187737 |
0.3624595 |
ILMN_1779670 |
934.6932 |
36 |
26.11979 |
0 |
ILMN_2321282 |
114.504 |
33 |
8.269876 |
0.06148867 |
ILMN_1772582 |
696.3027 |
38 |
32.82568 |
0 |
ILMN_1717783 |
178.8071 |
36 |
11.98973 |
0.03559871 |
ILMN_1814316 |
6928.511 |
34 |
142.8628 |
0 |
ILMN_2359168 |
6061.481 |
50 |
169.5054 |
0 |
ILMN_1731507 |
98.41409 |
30 |
7.949172 |
0.07119741 |
ILMN_1787689 |
105.7396 |
32 |
6.360799 |
0.06796116 |
ILMN_1745607 |
5548.822 |
49 |
190.3298 |
0 |
ILMN_2136495 |
44.13614 |
40 |
4.3596 |
0.8640777 |
ILMN_1668111 |
248.1643 |
34 |
11.27402 |
0.01294498 |
ILMN_2295559 |
126.1532 |
45 |
6.323533 |
0.05177994 |
ILMN_1735045 |
327.2166 |
41 |
17.51854 |
0.006472492 |
ILMN_1680754 |
77.92368 |
26 |
6.781641 |
0.1747573 |
ILMN_2375184 |
121.7809 |
40 |
6.449501 |
0.05501618 |
ILMN_1659452 |
121.2633 |
51 |
7.366088 |
0.05501618 |
Total number of rows: 24526
Table truncated, full table size 933 Kbytes.
Supplementary data files not provided |
Processed data included within Sample table |
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