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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 50/50 rep6 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
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| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 50% 121 / 50% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
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| Description |
replicate 6
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| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
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| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 50/50 rep6.Avg_NBEADS |
|
| DFCI #121/123 50/50 rep6.BEAD_STDERR |
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| DFCI #121/123 50/50 rep6.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 50/50 rep6.Avg_NBEADS |
DFCI #121/123 50/50 rep6.BEAD_STDERR |
DFCI #121/123 50/50 rep6.Detection Pval |
| ILMN_1762337 |
2192.565 |
50 |
91.20198 |
0 |
| ILMN_2055271 |
580.6957 |
35 |
22.71905 |
0 |
| ILMN_2383229 |
65.32401 |
35 |
4.552554 |
0.3592233 |
| ILMN_1806310 |
62.67712 |
40 |
3.530468 |
0.407767 |
| ILMN_1779670 |
850.2733 |
54 |
26.15092 |
0 |
| ILMN_2321282 |
117.3715 |
33 |
7.424937 |
0.06472492 |
| ILMN_1772582 |
1100.499 |
45 |
48.34713 |
0 |
| ILMN_1717783 |
244.8593 |
38 |
14.48954 |
0.02265372 |
| ILMN_1814316 |
5652.116 |
41 |
133.9586 |
0 |
| ILMN_2359168 |
5256.49 |
40 |
138.1065 |
0 |
| ILMN_1731507 |
39.48318 |
27 |
2.958431 |
0.9514563 |
| ILMN_1787689 |
112.8104 |
40 |
5.395746 |
0.06796116 |
| ILMN_1745607 |
5590.409 |
49 |
188.2431 |
0 |
| ILMN_2136495 |
497.5275 |
52 |
12.57029 |
0.003236246 |
| ILMN_1668111 |
46.44133 |
40 |
3.977554 |
0.8576052 |
| ILMN_2295559 |
47.50552 |
62 |
3.687964 |
0.8381877 |
| ILMN_1735045 |
331.9243 |
40 |
13.61926 |
0.01294498 |
| ILMN_1680754 |
88.70417 |
31 |
6.144711 |
0.1391586 |
| ILMN_2375184 |
143.6321 |
45 |
7.392666 |
0.04530744 |
| ILMN_1659452 |
120.8695 |
43 |
5.881166 |
0.06472492 |
Total number of rows: 24526
Table truncated, full table size 931 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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