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Sample GSM465804 Query DataSets for GSM465804
Status Public on Jan 13, 2010
Title DFCI #121/123 66/33 rep6
Sample type RNA
 
Source name Human ovarian tumor
Organism Homo sapiens
Characteristics gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 66% 121 / 33% 123
Treatment protocol Formalin-fixed, paraffin-embedded.
Extracted molecule total RNA
Extraction protocol RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
Label Cy3
Label protocol Standard Illumina labelling protocol.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description replicate 6
Data processing Raw data was analyzed using GenomeStudio v1.1.

Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
 
Submission date Oct 27, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
GSE18767 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios

Data table header descriptions
ID_REF
VALUE quantile normalized
DFCI #121/123 66/33 rep6.Avg_NBEADS
DFCI #121/123 66/33 rep6.BEAD_STDERR
DFCI #121/123 66/33 rep6.Detection Pval

Data table
ID_REF VALUE DFCI #121/123 66/33 rep6.Avg_NBEADS DFCI #121/123 66/33 rep6.BEAD_STDERR DFCI #121/123 66/33 rep6.Detection Pval
ILMN_1762337 1571.99 41 83.57021 0
ILMN_2055271 568.5693 33 17.12321 0.003236246
ILMN_2383229 173.8811 28 10.75234 0.03883495
ILMN_1806310 64.18067 42 5.348236 0.4045307
ILMN_1779670 355.3584 46 10.74526 0.006472492
ILMN_2321282 127.0651 45 7.881171 0.05825243
ILMN_1772582 1096.923 38 41.80074 0
ILMN_1717783 224.6844 38 10.71689 0.02265372
ILMN_1814316 7382.731 42 212.047 0
ILMN_2359168 7106.504 37 172.5963 0
ILMN_1731507 38.85455 41 3.64151 0.9644013
ILMN_1787689 103.8345 39 5.589106 0.1003236
ILMN_1745607 5772.212 44 156.7548 0
ILMN_2136495 54.39555 39 4.717321 0.6343042
ILMN_1668111 57.31036 42 5.020621 0.5469255
ILMN_2295559 52.33968 51 4.128756 0.6893204
ILMN_1735045 335.6461 50 11.66553 0.01294498
ILMN_1680754 100.4093 36 5.023586 0.1132686
ILMN_2375184 81.79849 38 6.579855 0.2006472
ILMN_1659452 81.37293 53 5.408852 0.2038835

Total number of rows: 24526

Table truncated, full table size 936 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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