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Status |
Public on Jan 13, 2010 |
Title |
DFCI #121/123 66/33 rep6 |
Sample type |
RNA |
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Source name |
Human ovarian tumor
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Organism |
Homo sapiens |
Characteristics |
gender: female tissue: ovarian tumor cell types: DFCI 121, DFCI 123 ratio mix: 66% 121 / 33% 123
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Treatment protocol |
Formalin-fixed, paraffin-embedded.
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Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
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Label |
Cy3
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Label protocol |
Standard Illumina labelling protocol.
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Hybridization protocol |
Standard Illumina hybridization protocol.
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Scan protocol |
Standard Illumina scanning protocol.
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Description |
replicate 6
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Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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Submission date |
Oct 27, 2009 |
Last update date |
Jan 13, 2010 |
Contact name |
Craig April |
E-mail(s) |
capril@illumina.com
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Organization name |
Illumina, Inc.
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Street address |
9885 Towne Centre Drive
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City |
San Diego |
State/province |
CA |
ZIP/Postal code |
92121-1975 |
Country |
USA |
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Platform ID |
GPL6883 |
Series (2) |
GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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Data table header descriptions |
ID_REF |
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VALUE |
quantile normalized |
DFCI #121/123 66/33 rep6.Avg_NBEADS |
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DFCI #121/123 66/33 rep6.BEAD_STDERR |
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DFCI #121/123 66/33 rep6.Detection Pval |
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Data table |
ID_REF |
VALUE |
DFCI #121/123 66/33 rep6.Avg_NBEADS |
DFCI #121/123 66/33 rep6.BEAD_STDERR |
DFCI #121/123 66/33 rep6.Detection Pval |
ILMN_1762337 |
1571.99 |
41 |
83.57021 |
0 |
ILMN_2055271 |
568.5693 |
33 |
17.12321 |
0.003236246 |
ILMN_2383229 |
173.8811 |
28 |
10.75234 |
0.03883495 |
ILMN_1806310 |
64.18067 |
42 |
5.348236 |
0.4045307 |
ILMN_1779670 |
355.3584 |
46 |
10.74526 |
0.006472492 |
ILMN_2321282 |
127.0651 |
45 |
7.881171 |
0.05825243 |
ILMN_1772582 |
1096.923 |
38 |
41.80074 |
0 |
ILMN_1717783 |
224.6844 |
38 |
10.71689 |
0.02265372 |
ILMN_1814316 |
7382.731 |
42 |
212.047 |
0 |
ILMN_2359168 |
7106.504 |
37 |
172.5963 |
0 |
ILMN_1731507 |
38.85455 |
41 |
3.64151 |
0.9644013 |
ILMN_1787689 |
103.8345 |
39 |
5.589106 |
0.1003236 |
ILMN_1745607 |
5772.212 |
44 |
156.7548 |
0 |
ILMN_2136495 |
54.39555 |
39 |
4.717321 |
0.6343042 |
ILMN_1668111 |
57.31036 |
42 |
5.020621 |
0.5469255 |
ILMN_2295559 |
52.33968 |
51 |
4.128756 |
0.6893204 |
ILMN_1735045 |
335.6461 |
50 |
11.66553 |
0.01294498 |
ILMN_1680754 |
100.4093 |
36 |
5.023586 |
0.1132686 |
ILMN_2375184 |
81.79849 |
38 |
6.579855 |
0.2006472 |
ILMN_1659452 |
81.37293 |
53 |
5.408852 |
0.2038835 |
Total number of rows: 24526
Table truncated, full table size 936 Kbytes.
Supplementary data files not provided |
Processed data included within Sample table |
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