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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 75/25 rep6 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 75% 121 / 25% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
|
| Description |
replicate 6
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| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
|
| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 75/25 rep6.Avg_NBEADS |
|
| DFCI #121/123 75/25 rep6.BEAD_STDERR |
|
| DFCI #121/123 75/25 rep6.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 75/25 rep6.Avg_NBEADS |
DFCI #121/123 75/25 rep6.BEAD_STDERR |
DFCI #121/123 75/25 rep6.Detection Pval |
| ILMN_1762337 |
1531.669 |
41 |
72.38063 |
0 |
| ILMN_2055271 |
502.2137 |
27 |
22.58465 |
0.003236246 |
| ILMN_2383229 |
40.40793 |
32 |
5.914728 |
0.9546925 |
| ILMN_1806310 |
61.13334 |
41 |
4.652964 |
0.4757282 |
| ILMN_1779670 |
446.6355 |
43 |
10.83793 |
0.003236246 |
| ILMN_2321282 |
121.8836 |
44 |
6.545554 |
0.06148867 |
| ILMN_1772582 |
1482.849 |
39 |
42.88707 |
0 |
| ILMN_1717783 |
283.7833 |
46 |
14.11262 |
0.01294498 |
| ILMN_1814316 |
8386.576 |
33 |
281.7782 |
0 |
| ILMN_2359168 |
7440.25 |
48 |
230.1555 |
0 |
| ILMN_1731507 |
113.3507 |
31 |
6.373217 |
0.07119741 |
| ILMN_1787689 |
99.39436 |
39 |
5.660834 |
0.09385113 |
| ILMN_1745607 |
5434.066 |
37 |
270.0189 |
0 |
| ILMN_2136495 |
336.5304 |
34 |
13.8158 |
0.009708738 |
| ILMN_1668111 |
315.9361 |
46 |
11.89275 |
0.01294498 |
| ILMN_2295559 |
51.07853 |
51 |
3.559566 |
0.7281553 |
| ILMN_1735045 |
281.0266 |
42 |
13.03853 |
0.01294498 |
| ILMN_1680754 |
79.00516 |
40 |
3.974089 |
0.2071197 |
| ILMN_2375184 |
130.9477 |
49 |
6.411697 |
0.05177994 |
| ILMN_1659452 |
124.0469 |
48 |
5.890072 |
0.05501618 |
Total number of rows: 24526
Table truncated, full table size 936 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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