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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 25/75 rep5 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
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| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 25% 121 / 75% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
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| Description |
replicate 5
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| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
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| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
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| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 25/75 rep5.Avg_NBEADS |
|
| DFCI #121/123 25/75 rep5.BEAD_STDERR |
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| DFCI #121/123 25/75 rep5.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 25/75 rep5.Avg_NBEADS |
DFCI #121/123 25/75 rep5.BEAD_STDERR |
DFCI #121/123 25/75 rep5.Detection Pval |
| ILMN_1762337 |
2937.924 |
44 |
100.2161 |
0 |
| ILMN_2055271 |
541.2977 |
35 |
25.54022 |
0.003236246 |
| ILMN_2383229 |
57.6365 |
30 |
7.085644 |
0.4854369 |
| ILMN_1806310 |
54.85623 |
38 |
4.884803 |
0.5631068 |
| ILMN_1779670 |
644.3595 |
52 |
24.35896 |
0 |
| ILMN_2321282 |
118.4338 |
35 |
6.114189 |
0.05501618 |
| ILMN_1772582 |
631.1536 |
44 |
29.24014 |
0 |
| ILMN_1717783 |
213.36 |
38 |
10.78324 |
0.02265372 |
| ILMN_1814316 |
6707.79 |
42 |
242.0645 |
0 |
| ILMN_2359168 |
6241.332 |
42 |
262.1646 |
0 |
| ILMN_1731507 |
56.9207 |
45 |
7.175054 |
0.4951456 |
| ILMN_1787689 |
80.79371 |
43 |
5.692775 |
0.1359223 |
| ILMN_1745607 |
5515.811 |
40 |
244.0638 |
0 |
| ILMN_2136495 |
526.3029 |
45 |
21.65529 |
0.003236246 |
| ILMN_1668111 |
131.908 |
35 |
6.789855 |
0.04854369 |
| ILMN_2295559 |
56.49734 |
49 |
3.413377 |
0.5048544 |
| ILMN_1735045 |
389.2573 |
37 |
18.8422 |
0.003236246 |
| ILMN_1680754 |
89.36643 |
39 |
5.592942 |
0.09061489 |
| ILMN_2375184 |
150.0996 |
57 |
5.346125 |
0.03883495 |
| ILMN_1659452 |
146.104 |
43 |
7.378656 |
0.03883495 |
Total number of rows: 24526
Table truncated, full table size 932 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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