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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 66/33 rep5 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 66% 121 / 33% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
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| Description |
replicate 5
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| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
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| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
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| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 66/33 rep5.Avg_NBEADS |
|
| DFCI #121/123 66/33 rep5.BEAD_STDERR |
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| DFCI #121/123 66/33 rep5.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 66/33 rep5.Avg_NBEADS |
DFCI #121/123 66/33 rep5.BEAD_STDERR |
DFCI #121/123 66/33 rep5.Detection Pval |
| ILMN_1762337 |
1910.959 |
42 |
99.11483 |
0 |
| ILMN_2055271 |
472.0007 |
38 |
11.78082 |
0.003236246 |
| ILMN_2383229 |
42.10017 |
34 |
5.521391 |
0.9158576 |
| ILMN_1806310 |
53.82624 |
40 |
4.814657 |
0.6472492 |
| ILMN_1779670 |
268.9124 |
48 |
9.890054 |
0.01294498 |
| ILMN_2321282 |
115.241 |
44 |
6.018911 |
0.05825243 |
| ILMN_1772582 |
1445.139 |
36 |
75.36342 |
0 |
| ILMN_1717783 |
303.1799 |
34 |
18.72773 |
0.01294498 |
| ILMN_1814316 |
6813.492 |
55 |
177.1488 |
0 |
| ILMN_2359168 |
6725.066 |
41 |
191.5021 |
0 |
| ILMN_1731507 |
87.88147 |
28 |
8.622931 |
0.1197411 |
| ILMN_1787689 |
87.41851 |
45 |
5.184772 |
0.1229773 |
| ILMN_1745607 |
5138.135 |
30 |
266.9051 |
0 |
| ILMN_2136495 |
43.69542 |
30 |
3.900555 |
0.8964401 |
| ILMN_1668111 |
150.935 |
52 |
5.58741 |
0.04854369 |
| ILMN_2295559 |
52.21008 |
57 |
3.73109 |
0.6957929 |
| ILMN_1735045 |
255.8448 |
57 |
9.56308 |
0.01618123 |
| ILMN_1680754 |
82.9458 |
34 |
6.245775 |
0.1326861 |
| ILMN_2375184 |
117.8156 |
50 |
5.845553 |
0.05825243 |
| ILMN_1659452 |
113.1685 |
35 |
8.411106 |
0.06148867 |
Total number of rows: 24526
Table truncated, full table size 933 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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