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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 75/25 rep5 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
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| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 75% 121 / 25% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
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| Description |
replicate 5
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| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
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| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
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| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 75/25 rep5.Avg_NBEADS |
|
| DFCI #121/123 75/25 rep5.BEAD_STDERR |
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| DFCI #121/123 75/25 rep5.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 75/25 rep5.Avg_NBEADS |
DFCI #121/123 75/25 rep5.BEAD_STDERR |
DFCI #121/123 75/25 rep5.Detection Pval |
| ILMN_1762337 |
2322.221 |
45 |
7.043094 |
0 |
| ILMN_2055271 |
728.6282 |
30 |
3.853293 |
0.02265372 |
| ILMN_2383229 |
59.58852 |
32 |
2.269607 |
0.6860842 |
| ILMN_1806310 |
74.1869 |
44 |
2.878297 |
0.4886732 |
| ILMN_1779670 |
149.4387 |
38 |
3.703221 |
0.1682848 |
| ILMN_2321282 |
150.716 |
36 |
2.824058 |
0.1650485 |
| ILMN_1772582 |
2009.008 |
40 |
5.151765 |
0 |
| ILMN_1717783 |
321.946 |
36 |
3.445165 |
0.05177994 |
| ILMN_1814316 |
5821.284 |
40 |
24.73441 |
0 |
| ILMN_2359168 |
5473.384 |
50 |
19.83306 |
0 |
| ILMN_1731507 |
91.21889 |
38 |
3.18745 |
0.3495146 |
| ILMN_1787689 |
222.8567 |
44 |
2.645201 |
0.09385113 |
| ILMN_1745607 |
10558.65 |
33 |
91.65408 |
0 |
| ILMN_2136495 |
555.6606 |
38 |
3.391829 |
0.02588997 |
| ILMN_1668111 |
234.345 |
38 |
3.387787 |
0.08737864 |
| ILMN_2295559 |
66.35659 |
57 |
1.683961 |
0.5889968 |
| ILMN_1735045 |
747.2554 |
47 |
3.432585 |
0.02265372 |
| ILMN_1680754 |
152.3517 |
33 |
3.164917 |
0.1618123 |
| ILMN_2375184 |
84.11714 |
43 |
2.359097 |
0.4110032 |
| ILMN_1659452 |
204.8827 |
52 |
2.641575 |
0.1035599 |
Total number of rows: 24526
Table truncated, full table size 956 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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