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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 25/75 rep4 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
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| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 25% 121 / 75% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
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| Description |
replicate 4
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| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
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| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
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| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 25/75 rep4.Avg_NBEADS |
|
| DFCI #121/123 25/75 rep4.BEAD_STDERR |
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| DFCI #121/123 25/75 rep4.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 25/75 rep4.Avg_NBEADS |
DFCI #121/123 25/75 rep4.BEAD_STDERR |
DFCI #121/123 25/75 rep4.Detection Pval |
| ILMN_1762337 |
5567.164 |
53 |
67.55511 |
0 |
| ILMN_2055271 |
932.2483 |
41 |
11.93947 |
0.003236246 |
| ILMN_2383229 |
64.54924 |
34 |
3.209086 |
0.4660194 |
| ILMN_1806310 |
69.39523 |
45 |
3.31023 |
0.3754045 |
| ILMN_1779670 |
187.8506 |
40 |
3.015038 |
0.05825243 |
| ILMN_2321282 |
145.123 |
35 |
4.989756 |
0.08090615 |
| ILMN_1772582 |
1595.086 |
46 |
15.95873 |
0 |
| ILMN_1717783 |
395.0926 |
45 |
6.190483 |
0.02588997 |
| ILMN_1814316 |
5067.531 |
44 |
65.65948 |
0 |
| ILMN_2359168 |
5240.672 |
34 |
56.13425 |
0 |
| ILMN_1731507 |
84.21835 |
44 |
2.781972 |
0.2621359 |
| ILMN_1787689 |
122.1042 |
53 |
3.103629 |
0.1035599 |
| ILMN_1745607 |
11593.56 |
56 |
202.1853 |
0 |
| ILMN_2136495 |
380.9052 |
27 |
10.05307 |
0.02588997 |
| ILMN_1668111 |
102.7385 |
46 |
3.608751 |
0.1618123 |
| ILMN_2295559 |
61.3747 |
45 |
2.257803 |
0.5113268 |
| ILMN_1735045 |
1080.65 |
48 |
14.30366 |
0.003236246 |
| ILMN_1680754 |
123.967 |
30 |
3.562219 |
0.1003236 |
| ILMN_2375184 |
147.3768 |
44 |
3.040851 |
0.0776699 |
| ILMN_1659452 |
161.5977 |
44 |
3.694585 |
0.06796116 |
Total number of rows: 24526
Table truncated, full table size 964 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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