 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 66/33 rep4 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 66% 121 / 33% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol.
|
| Scan protocol |
Standard Illumina scanning protocol.
|
| Description |
replicate 4
|
| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
|
| |
|
| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
|
| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 66/33 rep4.Avg_NBEADS |
|
| DFCI #121/123 66/33 rep4.BEAD_STDERR |
|
| DFCI #121/123 66/33 rep4.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 66/33 rep4.Avg_NBEADS |
DFCI #121/123 66/33 rep4.BEAD_STDERR |
DFCI #121/123 66/33 rep4.Detection Pval |
| ILMN_1762337 |
3621.983 |
52 |
116.8914 |
0 |
| ILMN_2055271 |
653.016 |
34 |
33.58496 |
0 |
| ILMN_2383229 |
52.38952 |
31 |
6.958544 |
0.6601942 |
| ILMN_1806310 |
80.30355 |
32 |
7.016548 |
0.1262136 |
| ILMN_1779670 |
591.1624 |
49 |
20.16616 |
0 |
| ILMN_2321282 |
132.9846 |
42 |
7.098118 |
0.04530744 |
| ILMN_1772582 |
2411.536 |
39 |
133.9776 |
0 |
| ILMN_1717783 |
602.983 |
35 |
42.07078 |
0 |
| ILMN_1814316 |
5559.582 |
39 |
189.7152 |
0 |
| ILMN_2359168 |
5290.704 |
39 |
224.0176 |
0 |
| ILMN_1731507 |
41.401 |
33 |
5.577015 |
0.9352751 |
| ILMN_1787689 |
82.55619 |
42 |
6.406101 |
0.1165049 |
| ILMN_1745607 |
6290.233 |
45 |
341.3633 |
0 |
| ILMN_2136495 |
44.84696 |
31 |
6.633281 |
0.8640777 |
| ILMN_1668111 |
52.94656 |
50 |
4.309897 |
0.6472492 |
| ILMN_2295559 |
187.5959 |
55 |
8.954517 |
0.01941748 |
| ILMN_1735045 |
547.9196 |
39 |
29.00912 |
0 |
| ILMN_1680754 |
79.75974 |
38 |
7.425511 |
0.1326861 |
| ILMN_2375184 |
117.1171 |
45 |
7.491068 |
0.06472492 |
| ILMN_1659452 |
103.7163 |
45 |
10.40199 |
0.06796116 |
Total number of rows: 24526
Table truncated, full table size 933 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
|
|
|
|
 |
