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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 75/25 rep4 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 75% 121 / 25% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
|
| Description |
replicate 4
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| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
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| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 75/25 rep4.Avg_NBEADS |
|
| DFCI #121/123 75/25 rep4.BEAD_STDERR |
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| DFCI #121/123 75/25 rep4.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 75/25 rep4.Avg_NBEADS |
DFCI #121/123 75/25 rep4.BEAD_STDERR |
DFCI #121/123 75/25 rep4.Detection Pval |
| ILMN_1762337 |
2876.519 |
52 |
124.3374 |
0 |
| ILMN_2055271 |
530.8293 |
32 |
26.54414 |
0.003236246 |
| ILMN_2383229 |
58.6525 |
25 |
5.69507 |
0.4789644 |
| ILMN_1806310 |
56.60942 |
30 |
8.94728 |
0.5469255 |
| ILMN_1779670 |
463.4266 |
59 |
20.17873 |
0.003236246 |
| ILMN_2321282 |
126.398 |
30 |
13.454 |
0.04854369 |
| ILMN_1772582 |
2421.486 |
36 |
180.5039 |
0 |
| ILMN_1717783 |
618.2559 |
31 |
43.53494 |
0 |
| ILMN_1814316 |
5949.727 |
40 |
211.6561 |
0 |
| ILMN_2359168 |
6098.557 |
42 |
175.6435 |
0 |
| ILMN_1731507 |
44.73563 |
41 |
8.058957 |
0.8511327 |
| ILMN_1787689 |
88.9076 |
34 |
7.46436 |
0.1100324 |
| ILMN_1745607 |
6958.514 |
38 |
427.59 |
0 |
| ILMN_2136495 |
130.8034 |
32 |
10.34067 |
0.04530744 |
| ILMN_1668111 |
113.3182 |
45 |
7.913824 |
0.06148867 |
| ILMN_2295559 |
47.71379 |
46 |
4.806783 |
0.7864078 |
| ILMN_1735045 |
724.7099 |
47 |
53.86696 |
0 |
| ILMN_1680754 |
99.3279 |
33 |
11.12596 |
0.08737864 |
| ILMN_2375184 |
111.8191 |
55 |
6.954714 |
0.06148867 |
| ILMN_1659452 |
116.1002 |
45 |
10.14679 |
0.05825243 |
Total number of rows: 24526
Table truncated, full table size 935 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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