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Sample GSM465787 Query DataSets for GSM465787
Status Public on Jan 13, 2010
Title DFCI #121/123 0/100 rep3
Sample type RNA
 
Source name Human ovarian tumor
Organism Homo sapiens
Characteristics gender: female
tissue: ovarian tumor
cell types: DFCI 123
ratio mix: 0% 121 / 100% 123
Treatment protocol Formalin-fixed, paraffin-embedded.
Extracted molecule total RNA
Extraction protocol RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
Label Cy3
Label protocol Standard Illumina labelling protocol.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description replicate 3
Data processing Raw data was analyzed using GenomeStudio v1.1.

Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
 
Submission date Oct 27, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
GSE18767 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios

Data table header descriptions
ID_REF
VALUE quantile normalized
DFCI #121/123 0/100 rep3.Avg_NBEADS
DFCI #121/123 0/100 rep3.BEAD_STDERR
DFCI #121/123 0/100 rep3.Detection Pval

Data table
ID_REF VALUE DFCI #121/123 0/100 rep3.Avg_NBEADS DFCI #121/123 0/100 rep3.BEAD_STDERR DFCI #121/123 0/100 rep3.Detection Pval
ILMN_1762337 5705.065 51 210.795 0
ILMN_2055271 707.3907 43 33.33024 0
ILMN_2383229 157.1754 43 10.21618 0.03883495
ILMN_1806310 60.53175 51 3.782973 0.4239482
ILMN_1779670 652.4334 44 20.80476 0
ILMN_2321282 116.844 37 8.135645 0.06148867
ILMN_1772582 193.9717 42 12.29312 0.02265372
ILMN_1717783 200.8442 46 10.67415 0.02265372
ILMN_1814316 4770.219 43 150.1365 0
ILMN_2359168 4675.177 37 182.7671 0
ILMN_1731507 243.8075 44 11.65982 0.01618123
ILMN_1787689 100.8454 40 6.195712 0.07119741
ILMN_1745607 6822.562 41 280.7988 0
ILMN_2136495 143.0166 31 10.48152 0.04530744
ILMN_1668111 133.1962 44 8.659787 0.05177994
ILMN_2295559 102.4256 51 6.960775 0.07119741
ILMN_1735045 833.0398 42 42.86917 0
ILMN_1680754 73.93934 33 9.040846 0.1877023
ILMN_2375184 119.0684 31 11.68049 0.05825243
ILMN_1659452 129.2322 35 11.68249 0.05177994

Total number of rows: 24526

Table truncated, full table size 935 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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