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Status |
Public on Jan 13, 2010 |
Title |
DFCI #121/123 33/66 rep3 |
Sample type |
RNA |
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Source name |
Human ovarian tumor
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Organism |
Homo sapiens |
Characteristics |
gender: female tissue: ovarian tumor cell types: DFCI 121, DFCI 123 ratio mix: 33% 121 / 66% 123
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Treatment protocol |
Formalin-fixed, paraffin-embedded.
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Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
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Label |
Cy3
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Label protocol |
Standard Illumina labelling protocol.
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Hybridization protocol |
Standard Illumina hybridization protocol.
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Scan protocol |
Standard Illumina scanning protocol.
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Description |
replicate 3
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Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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Submission date |
Oct 27, 2009 |
Last update date |
Jan 13, 2010 |
Contact name |
Craig April |
E-mail(s) |
capril@illumina.com
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Organization name |
Illumina, Inc.
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Street address |
9885 Towne Centre Drive
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City |
San Diego |
State/province |
CA |
ZIP/Postal code |
92121-1975 |
Country |
USA |
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Platform ID |
GPL6883 |
Series (2) |
GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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Data table header descriptions |
ID_REF |
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VALUE |
quantile normalized |
DFCI #121/123 33/66 rep3.Avg_NBEADS |
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DFCI #121/123 33/66 rep3.BEAD_STDERR |
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DFCI #121/123 33/66 rep3.Detection Pval |
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Data table |
ID_REF |
VALUE |
DFCI #121/123 33/66 rep3.Avg_NBEADS |
DFCI #121/123 33/66 rep3.BEAD_STDERR |
DFCI #121/123 33/66 rep3.Detection Pval |
ILMN_1762337 |
4812.276 |
52 |
249.0849 |
0 |
ILMN_2055271 |
528.133 |
40 |
29.84244 |
0 |
ILMN_2383229 |
47.40831 |
41 |
6.2177 |
0.7605178 |
ILMN_1806310 |
64.0554 |
41 |
7.119863 |
0.2653722 |
ILMN_1779670 |
452.2336 |
45 |
18.93797 |
0.003236246 |
ILMN_2321282 |
101.2515 |
49 |
6.636661 |
0.06472492 |
ILMN_1772582 |
1004.035 |
43 |
45.8122 |
0 |
ILMN_1717783 |
315.9361 |
35 |
35.72299 |
0.006472492 |
ILMN_1814316 |
4800.185 |
36 |
200.1211 |
0 |
ILMN_2359168 |
4755.432 |
43 |
197.1694 |
0 |
ILMN_1731507 |
41.95134 |
31 |
6.570095 |
0.9061489 |
ILMN_1787689 |
87.41851 |
42 |
9.507739 |
0.09708738 |
ILMN_1745607 |
6312.189 |
35 |
428.8553 |
0 |
ILMN_2136495 |
180.4209 |
33 |
15.88666 |
0.01941748 |
ILMN_1668111 |
104.969 |
39 |
9.238565 |
0.05825243 |
ILMN_2295559 |
55.47126 |
55 |
5.830279 |
0.4886732 |
ILMN_1735045 |
709.587 |
39 |
48.80367 |
0 |
ILMN_1680754 |
69.19584 |
33 |
9.303077 |
0.184466 |
ILMN_2375184 |
172.829 |
29 |
11.93157 |
0.02912621 |
ILMN_1659452 |
192.8963 |
41 |
9.783009 |
0.01941748 |
Total number of rows: 24526
Table truncated, full table size 930 Kbytes.
Supplementary data files not provided |
Processed data included within Sample table |
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