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Sample GSM465786 Query DataSets for GSM465786
Status Public on Jan 13, 2010
Title DFCI #121/123 33/66 rep3
Sample type RNA
 
Source name Human ovarian tumor
Organism Homo sapiens
Characteristics gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 33% 121 / 66% 123
Treatment protocol Formalin-fixed, paraffin-embedded.
Extracted molecule total RNA
Extraction protocol RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
Label Cy3
Label protocol Standard Illumina labelling protocol.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description replicate 3
Data processing Raw data was analyzed using GenomeStudio v1.1.

Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
 
Submission date Oct 27, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
GSE18767 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios

Data table header descriptions
ID_REF
VALUE quantile normalized
DFCI #121/123 33/66 rep3.Avg_NBEADS
DFCI #121/123 33/66 rep3.BEAD_STDERR
DFCI #121/123 33/66 rep3.Detection Pval

Data table
ID_REF VALUE DFCI #121/123 33/66 rep3.Avg_NBEADS DFCI #121/123 33/66 rep3.BEAD_STDERR DFCI #121/123 33/66 rep3.Detection Pval
ILMN_1762337 4812.276 52 249.0849 0
ILMN_2055271 528.133 40 29.84244 0
ILMN_2383229 47.40831 41 6.2177 0.7605178
ILMN_1806310 64.0554 41 7.119863 0.2653722
ILMN_1779670 452.2336 45 18.93797 0.003236246
ILMN_2321282 101.2515 49 6.636661 0.06472492
ILMN_1772582 1004.035 43 45.8122 0
ILMN_1717783 315.9361 35 35.72299 0.006472492
ILMN_1814316 4800.185 36 200.1211 0
ILMN_2359168 4755.432 43 197.1694 0
ILMN_1731507 41.95134 31 6.570095 0.9061489
ILMN_1787689 87.41851 42 9.507739 0.09708738
ILMN_1745607 6312.189 35 428.8553 0
ILMN_2136495 180.4209 33 15.88666 0.01941748
ILMN_1668111 104.969 39 9.238565 0.05825243
ILMN_2295559 55.47126 55 5.830279 0.4886732
ILMN_1735045 709.587 39 48.80367 0
ILMN_1680754 69.19584 33 9.303077 0.184466
ILMN_2375184 172.829 29 11.93157 0.02912621
ILMN_1659452 192.8963 41 9.783009 0.01941748

Total number of rows: 24526

Table truncated, full table size 930 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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