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Status |
Public on Jan 13, 2010 |
Title |
DFCI #121/123 25/75 rep3 |
Sample type |
RNA |
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Source name |
Human ovarian tumor
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Organism |
Homo sapiens |
Characteristics |
gender: female tissue: ovarian tumor cell types: DFCI 121, DFCI 123 ratio mix: 25% 121 / 75% 123
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Treatment protocol |
Formalin-fixed, paraffin-embedded.
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Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
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Label |
Cy3
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Label protocol |
Standard Illumina labelling protocol.
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Hybridization protocol |
Standard Illumina hybridization protocol.
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Scan protocol |
Standard Illumina scanning protocol.
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Description |
replicate 3
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Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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Submission date |
Oct 27, 2009 |
Last update date |
Jan 13, 2010 |
Contact name |
Craig April |
E-mail(s) |
capril@illumina.com
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Organization name |
Illumina, Inc.
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Street address |
9885 Towne Centre Drive
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City |
San Diego |
State/province |
CA |
ZIP/Postal code |
92121-1975 |
Country |
USA |
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Platform ID |
GPL6883 |
Series (2) |
GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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Data table header descriptions |
ID_REF |
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VALUE |
quantile normalized |
DFCI #121/123 25/75 rep3.Avg_NBEADS |
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DFCI #121/123 25/75 rep3.BEAD_STDERR |
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DFCI #121/123 25/75 rep3.Detection Pval |
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Data table |
ID_REF |
VALUE |
DFCI #121/123 25/75 rep3.Avg_NBEADS |
DFCI #121/123 25/75 rep3.BEAD_STDERR |
DFCI #121/123 25/75 rep3.Detection Pval |
ILMN_1762337 |
4576.891 |
69 |
193.676 |
0 |
ILMN_2055271 |
540.5466 |
32 |
21.34983 |
0 |
ILMN_2383229 |
68.2852 |
30 |
5.3667 |
0.197411 |
ILMN_1806310 |
60.00396 |
39 |
5.631648 |
0.3462783 |
ILMN_1779670 |
353.0644 |
43 |
15.21282 |
0.003236246 |
ILMN_2321282 |
104.637 |
35 |
8.959494 |
0.06148867 |
ILMN_1772582 |
1394.778 |
38 |
43.51684 |
0 |
ILMN_1717783 |
394.0555 |
32 |
33.32965 |
0.003236246 |
ILMN_1814316 |
4625.273 |
49 |
161.5375 |
0 |
ILMN_2359168 |
4455.804 |
35 |
195.2148 |
0 |
ILMN_1731507 |
106.1609 |
41 |
7.571067 |
0.06148867 |
ILMN_1787689 |
83.34467 |
39 |
7.4231 |
0.1035599 |
ILMN_1745607 |
6271.003 |
45 |
329.8872 |
0 |
ILMN_2136495 |
101.3813 |
38 |
10.97551 |
0.06796116 |
ILMN_1668111 |
96.96521 |
44 |
5.982029 |
0.06796116 |
ILMN_2295559 |
49.92171 |
53 |
5.316467 |
0.6569579 |
ILMN_1735045 |
715.0614 |
32 |
37.0052 |
0 |
ILMN_1680754 |
74.37315 |
31 |
7.12357 |
0.1391586 |
ILMN_2375184 |
186.8322 |
49 |
12.65173 |
0.02265372 |
ILMN_1659452 |
192.21 |
43 |
12.50608 |
0.01941748 |
Total number of rows: 24526
Table truncated, full table size 930 Kbytes.
Supplementary data files not provided |
Processed data included within Sample table |
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