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Sample GSM465785 Query DataSets for GSM465785
Status Public on Jan 13, 2010
Title DFCI #121/123 25/75 rep3
Sample type RNA
 
Source name Human ovarian tumor
Organism Homo sapiens
Characteristics gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 25% 121 / 75% 123
Treatment protocol Formalin-fixed, paraffin-embedded.
Extracted molecule total RNA
Extraction protocol RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
Label Cy3
Label protocol Standard Illumina labelling protocol.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description replicate 3
Data processing Raw data was analyzed using GenomeStudio v1.1.

Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
 
Submission date Oct 27, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
GSE18767 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios

Data table header descriptions
ID_REF
VALUE quantile normalized
DFCI #121/123 25/75 rep3.Avg_NBEADS
DFCI #121/123 25/75 rep3.BEAD_STDERR
DFCI #121/123 25/75 rep3.Detection Pval

Data table
ID_REF VALUE DFCI #121/123 25/75 rep3.Avg_NBEADS DFCI #121/123 25/75 rep3.BEAD_STDERR DFCI #121/123 25/75 rep3.Detection Pval
ILMN_1762337 4576.891 69 193.676 0
ILMN_2055271 540.5466 32 21.34983 0
ILMN_2383229 68.2852 30 5.3667 0.197411
ILMN_1806310 60.00396 39 5.631648 0.3462783
ILMN_1779670 353.0644 43 15.21282 0.003236246
ILMN_2321282 104.637 35 8.959494 0.06148867
ILMN_1772582 1394.778 38 43.51684 0
ILMN_1717783 394.0555 32 33.32965 0.003236246
ILMN_1814316 4625.273 49 161.5375 0
ILMN_2359168 4455.804 35 195.2148 0
ILMN_1731507 106.1609 41 7.571067 0.06148867
ILMN_1787689 83.34467 39 7.4231 0.1035599
ILMN_1745607 6271.003 45 329.8872 0
ILMN_2136495 101.3813 38 10.97551 0.06796116
ILMN_1668111 96.96521 44 5.982029 0.06796116
ILMN_2295559 49.92171 53 5.316467 0.6569579
ILMN_1735045 715.0614 32 37.0052 0
ILMN_1680754 74.37315 31 7.12357 0.1391586
ILMN_2375184 186.8322 49 12.65173 0.02265372
ILMN_1659452 192.21 43 12.50608 0.01941748

Total number of rows: 24526

Table truncated, full table size 930 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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