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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 50/50 rep3 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 50% 121 / 50% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
|
| Description |
replicate 3
|
| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
|
| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 50/50 rep3.Avg_NBEADS |
|
| DFCI #121/123 50/50 rep3.BEAD_STDERR |
|
| DFCI #121/123 50/50 rep3.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 50/50 rep3.Avg_NBEADS |
DFCI #121/123 50/50 rep3.BEAD_STDERR |
DFCI #121/123 50/50 rep3.Detection Pval |
| ILMN_1762337 |
4075.854 |
61 |
198.1432 |
0 |
| ILMN_2055271 |
592.6196 |
31 |
46.98113 |
0 |
| ILMN_2383229 |
56.93719 |
34 |
6.803265 |
0.4724919 |
| ILMN_1806310 |
50.78857 |
38 |
7.868995 |
0.6860842 |
| ILMN_1779670 |
401.6527 |
35 |
27.71376 |
0.003236246 |
| ILMN_2321282 |
118.2838 |
41 |
9.810214 |
0.04854369 |
| ILMN_1772582 |
1723.292 |
35 |
114.822 |
0 |
| ILMN_1717783 |
487.3362 |
33 |
53.79292 |
0.003236246 |
| ILMN_1814316 |
4239.785 |
42 |
205.1036 |
0 |
| ILMN_2359168 |
4737.046 |
52 |
153.7617 |
0 |
| ILMN_1731507 |
107.4561 |
38 |
11.18265 |
0.05177994 |
| ILMN_1787689 |
77.27236 |
42 |
8.57685 |
0.1359223 |
| ILMN_1745607 |
7080.309 |
36 |
480.7916 |
0 |
| ILMN_2136495 |
525.6432 |
46 |
33.06424 |
0 |
| ILMN_1668111 |
160.7583 |
48 |
10.64404 |
0.03236246 |
| ILMN_2295559 |
49.29129 |
50 |
6.072029 |
0.7281553 |
| ILMN_1735045 |
667.5256 |
37 |
50.77765 |
0 |
| ILMN_1680754 |
66.35659 |
26 |
7.728588 |
0.2750809 |
| ILMN_2375184 |
147.4597 |
45 |
10.98966 |
0.03883495 |
| ILMN_1659452 |
155.6387 |
52 |
11.20936 |
0.03883495 |
Total number of rows: 24526
Table truncated, full table size 931 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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