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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 25/75 rep2 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
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| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 25% 121 / 75% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
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| Description |
replicate 2
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| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
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| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
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| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 25/75 rep2.Avg_NBEADS |
|
| DFCI #121/123 25/75 rep2.BEAD_STDERR |
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| DFCI #121/123 25/75 rep2.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 25/75 rep2.Avg_NBEADS |
DFCI #121/123 25/75 rep2.BEAD_STDERR |
DFCI #121/123 25/75 rep2.Detection Pval |
| ILMN_1762337 |
5236.408 |
37 |
126.9447 |
0 |
| ILMN_2055271 |
888.6391 |
42 |
17.02472 |
0.003236246 |
| ILMN_2383229 |
59.01592 |
33 |
4.448447 |
0.5210356 |
| ILMN_1806310 |
87.97417 |
37 |
4.695559 |
0.1779935 |
| ILMN_1779670 |
210.296 |
46 |
5.107556 |
0.04530744 |
| ILMN_2321282 |
215.5928 |
50 |
6.066711 |
0.0420712 |
| ILMN_1772582 |
1142.025 |
45 |
19.04821 |
0.003236246 |
| ILMN_1717783 |
268.0004 |
47 |
7.673332 |
0.03883495 |
| ILMN_1814316 |
6279.594 |
36 |
112.1515 |
0 |
| ILMN_2359168 |
6081.588 |
36 |
130.9993 |
0 |
| ILMN_1731507 |
114.0372 |
33 |
3.969138 |
0.1003236 |
| ILMN_1787689 |
100.259 |
31 |
4.828927 |
0.1326861 |
| ILMN_1745607 |
10852.94 |
32 |
320.6101 |
0 |
| ILMN_2136495 |
221.94 |
46 |
6.802917 |
0.0420712 |
| ILMN_1668111 |
53.2386 |
32 |
5.910246 |
0.6634304 |
| ILMN_2295559 |
58.20819 |
50 |
3.837862 |
0.5469255 |
| ILMN_1735045 |
927.3057 |
44 |
18.76039 |
0.003236246 |
| ILMN_1680754 |
79.54411 |
30 |
4.712662 |
0.2200647 |
| ILMN_2375184 |
71.79895 |
37 |
3.15281 |
0.3074434 |
| ILMN_1659452 |
88.53613 |
39 |
4.743185 |
0.171521 |
Total number of rows: 24526
Table truncated, full table size 960 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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