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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 50/50 rep2 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 50% 121 / 50% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
|
| Description |
replicate 2
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| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
|
| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
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| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 50/50 rep2.Avg_NBEADS |
|
| DFCI #121/123 50/50 rep2.BEAD_STDERR |
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| DFCI #121/123 50/50 rep2.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 50/50 rep2.Avg_NBEADS |
DFCI #121/123 50/50 rep2.BEAD_STDERR |
DFCI #121/123 50/50 rep2.Detection Pval |
| ILMN_1762337 |
4160.825 |
42 |
208.1593 |
0 |
| ILMN_2055271 |
431.973 |
42 |
22.95397 |
0.003236246 |
| ILMN_2383229 |
122.6771 |
35 |
7.351165 |
0.05177994 |
| ILMN_1806310 |
73.2599 |
35 |
6.099094 |
0.171521 |
| ILMN_1779670 |
454.4786 |
50 |
16.91847 |
0.003236246 |
| ILMN_2321282 |
107.6189 |
49 |
7.686093 |
0.06796116 |
| ILMN_1772582 |
1503.137 |
55 |
88.07771 |
0 |
| ILMN_1717783 |
605.4954 |
34 |
38.6723 |
0 |
| ILMN_1814316 |
4830.903 |
41 |
240.1708 |
0 |
| ILMN_2359168 |
5095.471 |
46 |
218.1383 |
0 |
| ILMN_1731507 |
102.8178 |
41 |
6.509593 |
0.07119741 |
| ILMN_1787689 |
84.18211 |
39 |
6.497602 |
0.1067961 |
| ILMN_1745607 |
6515.747 |
40 |
342.6802 |
0 |
| ILMN_2136495 |
249.2993 |
21 |
12.9194 |
0.01294498 |
| ILMN_1668111 |
107.282 |
45 |
7.326612 |
0.06796116 |
| ILMN_2295559 |
46.50467 |
44 |
5.927833 |
0.7961165 |
| ILMN_1735045 |
552.3302 |
40 |
29.71057 |
0 |
| ILMN_1680754 |
82.41312 |
33 |
7.632151 |
0.1132686 |
| ILMN_2375184 |
105.069 |
51 |
6.908606 |
0.06796116 |
| ILMN_1659452 |
105.99 |
36 |
6.212566 |
0.06796116 |
Total number of rows: 24526
Table truncated, full table size 931 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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