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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 25/75 rep1 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 25% 121 / 75% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
|
| Scan protocol |
Standard Illumina scanning protocol.
|
| Description |
replicate 1
|
| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
|
| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 25/75 rep1.Avg_NBEADS |
|
| DFCI #121/123 25/75 rep1.BEAD_STDERR |
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| DFCI #121/123 25/75 rep1.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 25/75 rep1.Avg_NBEADS |
DFCI #121/123 25/75 rep1.BEAD_STDERR |
DFCI #121/123 25/75 rep1.Detection Pval |
| ILMN_1762337 |
4230.341 |
47 |
192.3477 |
0 |
| ILMN_2055271 |
408.6805 |
48 |
19.73161 |
0.003236246 |
| ILMN_2383229 |
48.3902 |
43 |
5.321781 |
0.7281553 |
| ILMN_1806310 |
65.54898 |
41 |
6.636541 |
0.2459547 |
| ILMN_1779670 |
354.2935 |
42 |
17.21452 |
0.006472492 |
| ILMN_2321282 |
115.2019 |
40 |
6.541461 |
0.05501618 |
| ILMN_1772582 |
1403.137 |
25 |
93.35907 |
0 |
| ILMN_1717783 |
413.3684 |
35 |
15.76818 |
0.003236246 |
| ILMN_1814316 |
3421.596 |
44 |
138.4361 |
0 |
| ILMN_2359168 |
3680.031 |
39 |
96.0719 |
0 |
| ILMN_1731507 |
87.7208 |
35 |
6.493121 |
0.08737864 |
| ILMN_1787689 |
72.92957 |
35 |
5.895488 |
0.1553398 |
| ILMN_1745607 |
6463.778 |
34 |
374.0065 |
0 |
| ILMN_2136495 |
40.47645 |
30 |
4.362299 |
0.9288026 |
| ILMN_1668111 |
152.303 |
35 |
8.721555 |
0.03559871 |
| ILMN_2295559 |
54.03473 |
66 |
4.743731 |
0.5404531 |
| ILMN_1735045 |
577.5493 |
47 |
35.21915 |
0.003236246 |
| ILMN_1680754 |
70.27251 |
35 |
8.28042 |
0.1877023 |
| ILMN_2375184 |
136.3293 |
45 |
8.073993 |
0.04854369 |
| ILMN_1659452 |
144.9193 |
47 |
8.590139 |
0.03559871 |
Total number of rows: 24526
Table truncated, full table size 936 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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