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Status |
Public on Jan 13, 2010 |
Title |
DFCI #121/123 75/25 rep1 |
Sample type |
RNA |
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Source name |
Human ovarian tumor
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Organism |
Homo sapiens |
Characteristics |
gender: female tissue: ovarian tumor cell types: DFCI 121, DFCI 123 ratio mix: 75% 121 / 25% 123
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Treatment protocol |
Formalin-fixed, paraffin-embedded.
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Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
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Label |
Cy3
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Label protocol |
Standard Illumina labelling protocol.
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Hybridization protocol |
Standard Illumina hybridization protocol.
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Scan protocol |
Standard Illumina scanning protocol.
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Description |
replicate 1
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Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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Submission date |
Oct 27, 2009 |
Last update date |
Jan 13, 2010 |
Contact name |
Craig April |
E-mail(s) |
capril@illumina.com
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Organization name |
Illumina, Inc.
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Street address |
9885 Towne Centre Drive
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City |
San Diego |
State/province |
CA |
ZIP/Postal code |
92121-1975 |
Country |
USA |
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Platform ID |
GPL6883 |
Series (2) |
GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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Data table header descriptions |
ID_REF |
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VALUE |
quantile normalized |
DFCI #121/123 75/25 rep1.Avg_NBEADS |
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DFCI #121/123 75/25 rep1.BEAD_STDERR |
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DFCI #121/123 75/25 rep1.Detection Pval |
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Data table |
ID_REF |
VALUE |
DFCI #121/123 75/25 rep1.Avg_NBEADS |
DFCI #121/123 75/25 rep1.BEAD_STDERR |
DFCI #121/123 75/25 rep1.Detection Pval |
ILMN_1762337 |
3772.128 |
44 |
2.601744 |
0 |
ILMN_2055271 |
1151 |
25 |
2.601491 |
0.01618123 |
ILMN_2383229 |
116.813 |
34 |
1.935226 |
0.5372168 |
ILMN_1806310 |
116.4091 |
34 |
1.994669 |
0.5372168 |
ILMN_1779670 |
151.2372 |
45 |
1.857836 |
0.433657 |
ILMN_2321282 |
250.8057 |
45 |
1.669528 |
0.2815534 |
ILMN_1772582 |
2564.472 |
50 |
1.911809 |
0 |
ILMN_1717783 |
310.8034 |
36 |
1.930303 |
0.2168285 |
ILMN_1814316 |
4567.522 |
48 |
2.385725 |
0 |
ILMN_2359168 |
4135.323 |
38 |
2.656214 |
0 |
ILMN_1731507 |
68.77381 |
33 |
2.287083 |
0.7831715 |
ILMN_1787689 |
73.10205 |
39 |
1.480601 |
0.7411003 |
ILMN_1745607 |
14952.73 |
48 |
14.02197 |
0 |
ILMN_2136495 |
1310.691 |
26 |
2.889107 |
0.01294498 |
ILMN_1668111 |
505.338 |
32 |
2.116285 |
0.09708738 |
ILMN_2295559 |
183.7072 |
51 |
1.751737 |
0.3851133 |
ILMN_1735045 |
215.2486 |
40 |
2.063764 |
0.3333333 |
ILMN_1680754 |
277.9409 |
38 |
2.029273 |
0.2394822 |
ILMN_2375184 |
203.4491 |
36 |
1.967961 |
0.3527508 |
ILMN_1659452 |
621.1579 |
54 |
1.435835 |
0.0776699 |
Total number of rows: 24526
Table truncated, full table size 972 Kbytes.
Supplementary data files not provided |
Processed data included within Sample table |
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