GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM4590037 Query DataSets for GSM4590037
Status Public on Jun 04, 2020
Title P60HippoRep5P1
Sample type SRA
Source name P60-70 Male Mice
Organism Mus musculus
Characteristics strain: C57Blk6/N
platform: Dropseq
tissue: Hippocampus
Extracted molecule total RNA
Extraction protocol
Drop-seq (Macosko et al. 2014 Cell) 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
Description single-nucleus gene expression data based on 3' transcript counts
Data processing Sequencing Reads were aligned against the relevant genome build using STAR
Aligned Reads within a gene were collapsed to UMI(XM)-Gene Pairs and associated with single-cells through a cell barcode (XC) shared on Read 1
A count matrix - called the digital gene expression (DGE) matrix - was output for GAD1+/GAD2+ interneurons. Columns belong to STAMPs (cells) and transcript counts (rows)
Genome_build: GRCm38.81 (mouse); MusPutFur1.0 (ferret); calJac3 (marmoset); rheMac8 (macaque); hg19 (human)
Supplementary_files_format_and_content: digital gene expression matrix; comma-delimited file with columns = cells and rows = transcript counts
Submission date Jun 03, 2020
Last update date Jun 05, 2020
Contact name Fenna Marie Krienen
Organization name Harvard Medical School
Department Genetics
Lab McCarroll
Street address 77 Ave Louis Pasteur, NRB 260
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL19057
Series (1)
GSE151761 Innovations in primate interneuron repertoire
BioSample SAMN15096837
SRA SRX8466687

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap