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Sample GSM4483906 Query DataSets for GSM4483906
Status Public on May 31, 2020
Title LNM16
Sample type RNA
Source name LNM16
Organism Homo sapiens
Characteristics tissue: Lymph node metastasis
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from FFPE sections using the recover all total nucleic acid isolation kit (Ambion Inc., Life Technologies, USA) according to the manufacturer’s protocol.
Label Cy3
Label protocol Cyanine-3 (Cy3) as per Agilent one-color (Agilent) labeling kit.
Hybridization protocol Labeled samples were hybridized to the Agilent 8 × 60k v16 miRNA microarray chip
Scan protocol Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2505C) using one color scan setting
Description microRNA expression of lymph node metastatic breast cancer.
Data processing The scanned images were analyzed with Feature Extraction Software 11.0 (Agilent) using default parameters. Data were analyzed using Agilent GeneSpring X software
Submission date Apr 17, 2020
Last update date Jun 01, 2020
Contact name Nehad M Alajez
Organization name King Saud University College of Medicine
Department Anatomy
Lab Stem Cell Unit
Street address 1st floor College of Medicne
City Riyadh
ZIP/Postal code 11461
Country Saudi Arabia
Platform ID GPL21576
Series (2)
GSE148846 microRNA expression profiling of paired primary and lymph node metastatic breast cancer patients
GSE148848 microRNA expression profiling of paired primary and lymph node metastatic breast cancer patients, and gene expression profiling of MDA-MB-231 cells transfected with hsa-miR-205-5p and hsa-miR-214-3p compared to scrambled miRNA precursors

Data table header descriptions
VALUE Normalized signal intensity

Data table
A_25_P00015259 3.970445514
A_25_P00010378 1.254509958
A_25_P00015257 4.809182296
A_25_P00015256 -0.1786121
A_25_P00015255 7.668694726
A_25_P00015254 2.586621798
A_25_P00010373 1.605268174
A_25_P00010372 0.279259553
A_25_P00010371 1.188201053
A_25_P00010370 1.319388547
A_25_P00015781 3.470617856
A_25_P00015780 8.381876528
A_25_P00015783 0.975076353
A_25_P00015782 4.344263972
A_25_P00015785 4.997400968
A_25_P00015784 -0.845480892
A_25_P00015787 4.122933908
A_25_P00015786 3.548006512
A_25_P00015789 1.933349168
A_25_P00015788 7.124460673

Total number of rows: 5937

Table truncated, full table size 155 Kbytes.

Supplementary file Size Download File type/resource
GSM4483906_LNM16.txt.gz 2.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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