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Sample GSM4474815 Query DataSets for GSM4474815
Status Public on Sep 26, 2022
Title HC16 pDC
Sample type RNA
 
Source name peripheral blood
Organism Homo sapiens
Characteristics diagnosis: Healthy control
cell type: pDC
date measured: 13.07.31
age: 33
Sex: F
sex (1 vs 2): 2
Treatment protocol Fresh peripheral blood from SLE patients and healthy volunteers was collected and T, B, monocyte, mDC, pDC, naiveB, memoryB and PBMC were isolated at spontaneous state.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using RNAqueous Micro Kit (Thermo Fisher Scientific/Ambion, USA) with RNase-Free DNase Set (Qiagen). RNA Integrity Number (RIN) value was measured using the Agilent Bioanalyzer 2100 (Agilent Technologies, Santa Clara, CA). RNA samples with RIN ≥7.0 were used.
Label Cy3
Label protocol Total RNA from a human sample were amplified using the Agilent Low RNA Input Fluorescent Linear Amplification Kit and labeled with Cy3 respectively according to manufacturer’s protocol.
 
Hybridization protocol Labeled samples were hybridized to microarray G4110B Human 1A Microarray (V2) for 17hr, 65 deg C.
Scan protocol Gene expression pixel intensities were extracted by scanning the microarrays with an Agilent Scanner.
Data processing Data processing and trimming were performed with GeneSpring ver. 12.6.1.
 
Submission date Apr 13, 2020
Last update date Sep 26, 2022
Contact name Kenji Okuma
E-mail(s) kenji.okuma@astellas.com
Phone +81-75-366-7462
Organization name Astellas Pharma Inc.
Street address 53, Shogoin Kawara-cho, Sakyo-ku, Medical Innovation Center
City Kyoto
State/province Kyoto
ZIP/Postal code 6068507
Country Japan
 
Platform ID GPL17077
Series (1)
GSE148601 mRNA expression analysis of several cell subset from peripheral blood of SLE patient and Healthy Control

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
GE_BrightCorner -0.8739414
ETG10_236652 0.23960876
ETG10_234183 0.4192233
ETG10_195139 0.28137493
ETG10_13482 0.27391672
ETG09_48764 0.27025795
ETG09_35454 0.29216337
ETG09_205211 0.32474184
ETG08_142674 0.13041401
ETG07_105829 0.15439129
ETG05_66023 0.24954796
ETG05_36762 0.013883591
ETG04_27747 0.21940994
ETG02_36680 0.29330683
ERCC-00171_229 0.24384117
ERCC-00170_100 -0.2857108
ERCC-00168_248 0.24340343
ERCC-00165_60 0.29707384
ERCC-00164_60 0.31151915
ERCC-00163_81 0.2676487

Total number of rows: 50739

Table truncated, full table size 1208 Kbytes.




Supplementary file Size Download File type/resource
GSM4474815_US91700289_253949411966_S01_GE1_107_Sep09_1_2.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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