|
Status |
Public on Apr 10, 2024 |
Title |
Clone8_Minus [ATAC-seq] |
Sample type |
SRA |
|
|
Source name |
Mouse Bone Marrow ER-Hoxb8 monocytic cells
|
Organism |
Mus musculus |
Characteristics |
cell type: ER-Hoxb8 cells
|
Growth protocol |
ER-HoxB8 cells were maintained in RPMI medium supplemented with 10% FBS, penicillin/streptomycin, and SCF.
|
Extracted molecule |
genomic DNA |
Extraction protocol |
ATAC-seq samples were performed as previously described (Buenrostro et al., 2015)
|
|
|
Library strategy |
ATAC-seq |
Library source |
genomic |
Library selection |
other |
Instrument model |
Illumina NextSeq 500 |
|
|
Description |
ATAC-Seqdata in ER-Hoxb8 cells
|
Data processing |
Illumina software used for basecalling. Raw sequences of ATAC-seq data were mapped with a Bowtie2 mapper with a default setting to the mouse genome (mm10). Genome_build: mm10 Supplementary_files_format_and_content: peaks
|
|
|
Submission date |
Apr 13, 2020 |
Last update date |
Apr 10, 2024 |
Contact name |
David T Scadden |
E-mail(s) |
dscadden@mgh.harvard.edu
|
Organization name |
MGH
|
Department |
Center for Regenerative Medicine
|
Street address |
185 Cambridge St
|
City |
Boston |
State/province |
MA |
ZIP/Postal code |
02114 |
Country |
USA |
|
|
Platform ID |
GPL19057 |
Series (2) |
GSE148549 |
Functionally distinct subset of monocytes in mouse and human blood [ATAC-Seq] |
GSE148555 |
Functionally distinct subset of monocytes in mouse and human blood |
|
Relations |
BioSample |
SAMN14590977 |
SRA |
SRX8110206 |