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Sample GSM4473392 Query DataSets for GSM4473392
Status Public on Apr 10, 2024
Title Clone1_Plus [ATAC-seq]
Sample type SRA
 
Source name Mouse Bone Marrow ER-Hoxb8 GMP cells
Organism Mus musculus
Characteristics cell type: ER-Hoxb8 cells
Growth protocol ER-HoxB8 cells were maintained in RPMI medium supplemented with 10% FBS, penicillin/streptomycin, and SCF.
Extracted molecule genomic DNA
Extraction protocol ATAC-seq samples were performed as previously described (Buenrostro et al., 2015)
 
Library strategy ATAC-seq
Library source genomic
Library selection other
Instrument model Illumina NextSeq 500
 
Description ATAC-Seqdata in ER-Hoxb8 cells
Data processing Illumina software used for basecalling.
Raw sequences of ATAC-seq data were mapped with a Bowtie2 mapper with a default setting to the mouse genome (mm10).
Genome_build: mm10
Supplementary_files_format_and_content: peaks
 
Submission date Apr 13, 2020
Last update date Apr 10, 2024
Contact name David T Scadden
E-mail(s) dscadden@mgh.harvard.edu
Organization name MGH
Department Center for Regenerative Medicine
Street address 185 Cambridge St
City Boston
State/province MA
ZIP/Postal code 02114
Country USA
 
Platform ID GPL19057
Series (2)
GSE148549 Functionally distinct subset of monocytes in mouse and human blood [ATAC-Seq]
GSE148555 Functionally distinct subset of monocytes in mouse and human blood
Relations
BioSample SAMN14590999
SRA SRX8110211

Supplementary file Size Download File type/resource
GSM4473392_Clone1_Plus.peak.txt.gz 1.1 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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