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GEO accession:
Sample GSM446992
Query DataSets for GSM446992
Status
Public on Aug 15, 2010
Title
Untreated control rep2
Sample type
RNA
Source name
Mouse Embryonic stem cells(E14Tg2A.4)
Organism
Mus musculus
Characteristics
cell line: E14Tg2A.4
Biomaterial provider
MMRRC at university of california, Davis
Extracted molecule
total RNA
Extraction protocol
USB total RNA extraction kit
Label
biotin
Label protocol
biotinylated cRNA were prepared from 10ug of total RNA using the standard labeling techniques for affymetrix chips
Hybridization protocol
10 ug cRNA were hybridized to the affymetrix MOE 430 2.0 chips
Scan protocol
genechips were scanned using the Hewiett-Packard genearray scanner
Description
E14Tg2A.4 cells were untreated.
Data processing
MAS 5.0
Submission date
Aug 31, 2009
Last update date
Sep 01, 2009
Contact name
Qiaoran Xi
E-mail(s)
xiq@mskcc.org
Organization name
MSKCC
Department
Cancer biology and genetics
Lab
Joan Massague
Street address
1275, York ave.
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL1261
Series (1)
GSE17896
Mouse Embryonic Stem Cell E14Tg2A.4 BMP2 Responses
Data table header descriptions
ID_REF
VALUE
Mas5-caculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if transcript was present(p), absent(A), or marginal(M), or nor call(NC)
DETECTION P-VALUE
P-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
314.753
P
0.000126798
AFFX-BioB-M_at
479.399
P
6.02111e-05
AFFX-BioB-3_at
315.296
P
7.00668e-05
AFFX-BioC-5_at
986.097
P
7.00668e-05
AFFX-BioC-3_at
988.619
P
7.00668e-05
AFFX-BioDn-5_at
2144.35
P
5.16732e-05
AFFX-BioDn-3_at
4683.97
P
0.000340305
AFFX-CreX-5_at
12989.8
P
5.16732e-05
AFFX-CreX-3_at
14259.9
P
4.42873e-05
AFFX-DapX-5_at
23.0941
M
0.0502142
AFFX-DapX-M_at
31.7099
A
0.195266
AFFX-DapX-3_at
16.0265
A
0.699394
AFFX-LysX-5_at
12.3607
A
0.102165
AFFX-LysX-M_at
6.8704
A
0.760937
AFFX-LysX-3_at
1.57606
A
0.760956
AFFX-PheX-5_at
2.11582
A
0.971543
AFFX-PheX-M_at
2.01718
A
0.916408
AFFX-PheX-3_at
48.2928
A
0.440646
AFFX-ThrX-5_at
31.3531
A
0.185131
AFFX-ThrX-M_at
22.7758
A
0.368438
Total number of rows:
45101
Table truncated, full table size
1376 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM446992.CEL.gz
6.4 Mb
(ftp)
(http)
CEL
GSM446992.CHP.gz
11.6 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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