GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM446986
Query DataSets for GSM446986
Status
Public on Aug 15, 2010
Title
BMP-2 treated for 1 h at 25ng/ml rep1
Sample type
RNA
Source name
Mouse Embryonic stem cells(E14Tg2A.4)
Organism
Mus musculus
Characteristics
cell line: E14Tg2A.4
Biomaterial provider
MMRRC at university of california, Davis
Extracted molecule
total RNA
Extraction protocol
USB total RNA extraction kit
Label
biotin
Label protocol
biotinylated cRNA were prepared from 10ug of total RNA using the standard labeling techniques for affymetrix chips
Hybridization protocol
10 ug cRNA were hybridized to the affymetrix MOE 430 2.0 chips
Scan protocol
genechips were scanned using the Hewiett-Packard genearray scanner
Description
E14Tg2A.4 cells were treated with BMP-2 at 25ng/ml for 1 hour
Data processing
MAS 5.0
Submission date
Aug 31, 2009
Last update date
Sep 01, 2009
Contact name
Qiaoran Xi
E-mail(s)
xiq@mskcc.org
Organization name
MSKCC
Department
Cancer biology and genetics
Lab
Joan Massague
Street address
1275, York ave.
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL1261
Series (1)
GSE17896
Mouse Embryonic Stem Cell E14Tg2A.4 BMP2 Responses
Data table header descriptions
ID_REF
VALUE
Mas5-caculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if transcript was present(p), absent(A), or marginal(M), or nor call(NC)
DETECTION P-VALUE
P-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
284.451
P
0.000340305
AFFX-BioB-M_at
495.211
P
6.02111e-05
AFFX-BioB-3_at
268.56
P
6.02111e-05
AFFX-BioC-5_at
1057.51
P
7.00668e-05
AFFX-BioC-3_at
1003.39
P
4.42873e-05
AFFX-BioDn-5_at
1949.52
P
4.42873e-05
AFFX-BioDn-3_at
4438.39
P
0.000296708
AFFX-CreX-5_at
13658.6
P
5.16732e-05
AFFX-CreX-3_at
14853
P
4.42873e-05
AFFX-DapX-5_at
16.3068
A
0.131361
AFFX-DapX-M_at
17.596
A
0.275146
AFFX-DapX-3_at
4.95885
A
0.772364
AFFX-LysX-5_at
3.96602
A
0.58862
AFFX-LysX-M_at
15.3181
A
0.749204
AFFX-LysX-3_at
4.96455
A
0.574038
AFFX-PheX-5_at
0.981871
A
0.971543
AFFX-PheX-M_at
1.6434
A
0.960339
AFFX-PheX-3_at
28.2306
A
0.275146
AFFX-ThrX-5_at
19.7524
A
0.41138
AFFX-ThrX-M_at
1.76813
A
0.749223
Total number of rows:
45101
Table truncated, full table size
1377 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM446986.CEL.gz
6.3 Mb
(ftp)
(http)
CEL
GSM446986.CHP.gz
11.5 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|