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Sample GSM441557 Query DataSets for GSM441557
Status Public on Aug 19, 2009
Title *05-074
Sample type RNA
 
Source name No fusion B-ALL
Organism Homo sapiens
Characteristics tissue: Bone marrow
ethnicity: Chinese
disease: pediatric acute lymphoblastic leukemia
chinese pediatric all subtype: No fusion B-ALL
relapsed: yes
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from cryopreserved mononuclear cell suspensions from BM samples using Trizol (Invitrogen) and purified with the RNeasy Kit (Qiagen).
Label biotin
Label protocol Biotinylated cRNA were synthesized with One-Cycle Target Labeling and Control Reagents (Affymetrix).
 
Hybridization protocol The labeled RNA was then fragmented and hybridized to HG-U133A 2.0 oligonucleotide arrays (Affymetrix Incorporated, Santa Clara, CA) according to Affymetrix protocols.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
Description Chinese ALL sample.
Sample ID: 05-074
Data processing Data were processed by using the robust multi-array analysis (RMA) from the Bioconductor package.
 
Submission date Aug 18, 2009
Last update date Aug 25, 2009
Contact name Nan Qiao
Organization name Institute of Genetics and Developmental Biology
Department System Biology
Street address Datun Road
City Beijing
ZIP/Postal code 100101
Country China
 
Platform ID GPL571
Series (1)
GSE17703 Bone marrow gene expression of pediatric acute lymphoblastic leukemia (ALL)

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1007_s_at 146.433028
1053_at 172.910648
117_at 46.301102
121_at 422.681194
1255_g_at 22.893422
1294_at 241.824103
1316_at 53.169605
1320_at 32.865152
1405_i_at 37.295596
1431_at 24.834732
1438_at 45.882988
1487_at 95.812023
1494_f_at 36.406665
1598_g_at 141.221586
160020_at 108.34446
1729_at 78.447917
1773_at 40.845312
177_at 26.486352
179_at 439.469608
1861_at 54.50357

Total number of rows: 22277

Table truncated, full table size 460 Kbytes.




Supplementary file Size Download File type/resource
GSM441557.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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