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Sample GSM441494 Query DataSets for GSM441494
Status Public on Aug 19, 2009
Title *04-088
Sample type RNA
 
Source name t(12;21)
Organism Homo sapiens
Characteristics tissue: Bone marrow
ethnicity: Chinese
disease: pediatric acute lymphoblastic leukemia
chinese pediatric all subtype: t(12;21)
relapsed: yes
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from cryopreserved mononuclear cell suspensions from BM samples using Trizol (Invitrogen) and purified with the RNeasy Kit (Qiagen).
Label biotin
Label protocol Biotinylated cRNA were synthesized with One-Cycle Target Labeling and Control Reagents (Affymetrix).
 
Hybridization protocol The labeled RNA was then fragmented and hybridized to HG-U133A 2.0 oligonucleotide arrays (Affymetrix Incorporated, Santa Clara, CA) according to Affymetrix protocols.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
Description Chinese ALL sample.
Sample ID: 04-088
Data processing Data were processed by using the robust multi-array analysis (RMA) from the Bioconductor package.
 
Submission date Aug 18, 2009
Last update date Aug 25, 2009
Contact name Nan Qiao
Organization name Institute of Genetics and Developmental Biology
Department System Biology
Street address Datun Road
City Beijing
ZIP/Postal code 100101
Country China
 
Platform ID GPL571
Series (1)
GSE17703 Bone marrow gene expression of pediatric acute lymphoblastic leukemia (ALL)

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1007_s_at 137.838133
1053_at 139.290243
117_at 54.382761
121_at 275.011075
1255_g_at 21.086592
1294_at 433.728465
1316_at 49.761427
1320_at 34.100103
1405_i_at 107.346695
1431_at 26.007541
1438_at 40.749655
1487_at 80.083429
1494_f_at 32.844335
1598_g_at 112.781424
160020_at 98.179522
1729_at 92.283686
1773_at 34.24967
177_at 28.686682
179_at 359.645426
1861_at 43.287992

Total number of rows: 22277

Table truncated, full table size 460 Kbytes.




Supplementary file Size Download File type/resource
GSM441494.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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