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Sample GSM4413338 Query DataSets for GSM4413338
Status Public on Mar 17, 2020
Title 5FU_FO898_SC_Transcriptome
Sample type SRA
 
Source name Bone marrow LSK
Organism Mus musculus
Characteristics cell type: Bone marrow LSK
treatment: Dox
system: cCARLIN
Extracted molecule polyA RNA
Extraction protocol Cells were sorted by FACS and encapsulated by 10x
Libraries were prepared according to 10x Chromium single-cell RNA protocols. Library was sequenced on an Illumina NextSeq sequencer
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina MiSeq
 
Data processing Cellranger v2.2.0 (with default parameters) was used to process single-cell RNA sequencing datasets prepared using CellRanger V2 Chemistry
Cellranger v3.0.2 (with default parameters) was used to process single-cell RNA sequencing datasets prepared using CellRanger V3 Chemistry
Genome_build: mm10
Supplementary_files_format_and_content: H5 - CellRanger single-cell count matrix
 
Submission date Mar 16, 2020
Last update date Mar 17, 2020
Contact name Duluxan Sritharan
Organization name Harvard University
Street address 240 Longwood Avenue, Bldg. C
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platform ID GPL16417
Series (1)
GSE146972 An engineered CRISPR/Cas9 mouse line for simultaneous readout of lineage histories and gene expression profiles in single cells
Relations
BioSample SAMN14382781
SRA SRX7916507

Supplementary file Size Download File type/resource
GSM4413338_Processed_5FU_FO898_SC_Transcriptome_filtered_feature_bc_matrix.h5 19.5 Mb (ftp)(http) H5
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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