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Sample GSM439908 Query DataSets for GSM439908
Status Public on Dec 01, 2011
Title Ewing sarcoma patient sample R53 (set A)
Sample type RNA
 
Source name freshfrozen tissue sample
Organism Homo sapiens
Characteristics sample id: R53
diagnosis: Ewing
tissue: tumor
state: Primary
age: 19
sex: F
efs (months): 87.7
ovs (months): 87.7
status: NED
Treatment protocol not applicable
Growth protocol Cell lines were cultured according to Manara et al., 2002
Extracted molecule total RNA
Extraction protocol RNA was extracted using Invitrogen TRIzol extraction kit according to manufacture's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the Affymetrix GeneChip One-Cycle Target Labelling protocol from 5 ug of total RNA.
 
Hybridization protocol Following fragmentation, cRNA were hybridized for 16 hr at 45C on Affymetrix Human Genome U133 Plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol Arrays were scanned using GeneChip Scanner 3000
Description n/a
Data processing Images were analysed using GeneChip Operating Software
 
Submission date Aug 12, 2009
Last update date Dec 01, 2011
Contact name Suvi Savola
URL http://www.helsinki.fi/cmg
Organization name University of Helsinki
Department Pathology
Lab Laboratory of Cytomolecular Genetics
Street address Haartmaninkatu 3
City Helsinki
ZIP/Postal code 00014
Country Finland
 
Platform ID GPL570
Series (2)
GSE17618 Inflammatory gene profiling of Ewing sarcoma family of tumors (set A)
GSE17679 Inflammatory gene profiling of Ewing sarcoma family of tumors

Data table header descriptions
ID_REF
VALUE RMA normalized data

Data table
ID_REF VALUE
1007_s_at 10.02934758
1053_at 5.611110307
117_at 4.355101964
121_at 6.596679422
1255_g_at 2.801601895
1294_at 6.445464539
1316_at 4.719508941
1320_at 3.307475822
1405_i_at 3.915715975
1431_at 3.422034671
1438_at 6.627113308
1487_at 5.783799078
1494_f_at 4.325536846
1552256_a_at 7.342498377
1552257_a_at 6.694244738
1552258_at 3.38385517
1552261_at 3.7404327
1552263_at 3.855215479
1552264_a_at 4.893480841
1552266_at 3.074978839

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM439908_R53.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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