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Sample GSM439906 Query DataSets for GSM439906
Status Public on Dec 01, 2011
Title Ewing sarcoma patient sample R51 (set A)
Sample type RNA
 
Source name freshfrozen tissue sample
Organism Homo sapiens
Characteristics sample id: R51
diagnosis: Askin
state: Primary
age: 24
sex: M
efs (months): 4.6
ovs (months): 10.9
status: Dead
Treatment protocol not applicable
Growth protocol Cell lines were cultured according to Manara et al., 2002
Extracted molecule total RNA
Extraction protocol RNA was extracted using Invitrogen TRIzol extraction kit according to manufacture's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the Affymetrix GeneChip One-Cycle Target Labelling protocol from 5 ug of total RNA.
 
Hybridization protocol Following fragmentation, cRNA were hybridized for 16 hr at 45C on Affymetrix Human Genome U133 Plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol Arrays were scanned using GeneChip Scanner 3000
Description n/a
Data processing Images were analysed using GeneChip Operating Software
 
Submission date Aug 12, 2009
Last update date Dec 01, 2011
Contact name Suvi Savola
URL http://www.helsinki.fi/cmg
Organization name University of Helsinki
Department Pathology
Lab Laboratory of Cytomolecular Genetics
Street address Haartmaninkatu 3
City Helsinki
ZIP/Postal code 00014
Country Finland
 
Platform ID GPL570
Series (2)
GSE17618 Inflammatory gene profiling of Ewing sarcoma family of tumors (set A)
GSE17679 Inflammatory gene profiling of Ewing sarcoma family of tumors

Data table header descriptions
ID_REF
VALUE RMA normalized data

Data table
ID_REF VALUE
1007_s_at 9.142740343
1053_at 6.66012695
117_at 7.525941736
121_at 6.322381652
1255_g_at 3.189492181
1294_at 5.157619918
1316_at 4.20714496
1320_at 3.384027891
1405_i_at 2.665712101
1431_at 4.699034448
1438_at 6.266489191
1487_at 6.043496342
1494_f_at 3.798227483
1552256_a_at 7.249651943
1552257_a_at 6.644494594
1552258_at 3.024473355
1552261_at 3.927489115
1552263_at 3.590399355
1552264_a_at 4.808018192
1552266_at 2.91916934

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM439906_R51.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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