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Sample GSM437980 Query DataSets for GSM437980
Status Public on Jan 13, 2010
Title MCF-7 100 ng IVT-based rep1
Sample type RNA
 
Source name Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics platform_id: IVT-based
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label biotin-streptavidin Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 10, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17575 Whole-Genome Gene Expression Profiling of FFPE Tissue Samples with WG-DASL and IVT-based assays
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
MCF-7-100 DH rep1.Avg_NBEADS
MCF-7-100 DH rep1.BEAD_STDERR
MCF-7-100 DH rep1.Detection Pval

Data table
ID_REF VALUE MCF-7-100 DH rep1.Avg_NBEADS MCF-7-100 DH rep1.BEAD_STDERR MCF-7-100 DH rep1.Detection Pval
ILMN_1762337 50.0696 42 4.37311 0.3300971
ILMN_2055271 48.57658 21 6.596956 0.3527508
ILMN_2383229 62.65231 27 3.005666 0.1812298
ILMN_1806310 79.9109 44 4.024349 0.09061489
ILMN_1779670 54.90685 37 4.496209 0.2427184
ILMN_2321282 101.2311 35 4.119612 0.06796116
ILMN_1772582 74.96146 59 2.527482 0.1165049
ILMN_1717783 33.21559 21 3.993946 0.9514563
ILMN_1814316 41.9538 26 4.37686 0.6148868
ILMN_2359168 37.68392 43 3.520741 0.8187702
ILMN_1731507 34.81887 32 3.340822 0.9320388
ILMN_1787689 93.39974 35 3.667095 0.07119741
ILMN_1745607 51.24012 34 4.769277 0.3074434
ILMN_2136495 44.1961 32 3.968481 0.5242718
ILMN_1668111 39.10446 38 2.887465 0.7734628
ILMN_2295559 47.71953 34 2.96069 0.4012945
ILMN_1735045 1692.933 49 14.02534 0
ILMN_1680754 106.82 34 3.682441 0.06796116
ILMN_2375184 67.09171 50 3.052401 0.1585761
ILMN_1659452 102.0281 41 3.614833 0.06796116

Total number of rows: 24526

Table truncated, full table size 982 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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