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Sample GSM437969 Query DataSets for GSM437969
Status Public on Jan 13, 2010
Title R/M 10/90 rep2
Sample type RNA
 
Source name Burkitts Lymphoma (Raji) Total RNA (Ambion Cat# AM7876); Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics ratio mix: 10% Raji/90% MCF-7
cell types: Burkitts Lymphoma (Raji) and Breast Adenocarcinoma (MCF-7)
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 10, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17573 Whole-Genome Gene Expression Profiling of FFPE Raji and MCF-7 Mixed Ratio Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
R/M 10/90 rep2.Avg_NBEADS
R/M 10/90 rep2.BEAD_STDERR
R/M 10/90 rep2.Detection Pval

Data table
ID_REF VALUE R/M 10/90 rep2.Avg_NBEADS R/M 10/90 rep2.BEAD_STDERR R/M 10/90 rep2.Detection Pval
ILMN_1762337 4211.581 41 265.1887 0
ILMN_2055271 127.6561 39 18.37846 0.04854369
ILMN_2383229 61.53399 27 13.65334 0.2135922
ILMN_1806310 16.80672 37 20.45681 0.8478965
ILMN_1779670 39.22898 49 13.98881 0.5307443
ILMN_2321282 123.0039 32 11.60802 0.05177994
ILMN_1772582 409.4538 42 23.76383 0.006472492
ILMN_1717783 767.0634 42 61.83196 0
ILMN_1814316 225.0446 41 21.86677 0.02265372
ILMN_2359168 249.4374 36 16.59456 0.01941748
ILMN_1731507 49.52258 39 15.54591 0.3592233
ILMN_1787689 86.6677 44 14.90465 0.09708738
ILMN_1745607 131.4483 42 15.30305 0.04530744
ILMN_2136495 215.7652 37 21.53112 0.02265372
ILMN_1668111 28.28495 32 16.05099 0.6569579
ILMN_2295559 10.33038 51 14.53154 0.9093851
ILMN_1735045 3578.395 41 177.3239 0
ILMN_1680754 47.26961 36 19.48888 0.3851133
ILMN_2375184 86.47767 44 14.46534 0.09708738
ILMN_1659452 84.94756 53 14.2067 0.1003236

Total number of rows: 24526

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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