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Sample GSM437967 Query DataSets for GSM437967
Status Public on Jan 13, 2010
Title R/M 25/75 rep1
Sample type RNA
 
Source name Burkitts Lymphoma (Raji) Total RNA (Ambion Cat# AM7876); Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics ratio mix: 25% Raji/75% MCF-7
cell types: Burkitts Lymphoma (Raji) and Breast Adenocarcinoma (MCF-7)
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 10, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17573 Whole-Genome Gene Expression Profiling of FFPE Raji and MCF-7 Mixed Ratio Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
R/M 25/75 rep1.Avg_NBEADS
R/M 25/75 rep1.BEAD_STDERR
R/M 25/75 rep1.Detection Pval

Data table
ID_REF VALUE R/M 25/75 rep1.Avg_NBEADS R/M 25/75 rep1.BEAD_STDERR R/M 25/75 rep1.Detection Pval
ILMN_1762337 3793.074 48 165.875 0
ILMN_2055271 100.9726 20 13.08316 0.07443365
ILMN_2383229 38.70849 37 11.59195 0.5210356
ILMN_1806310 52.47631 37 13.73484 0.3462783
ILMN_1779670 43.08826 38 17.51386 0.4466019
ILMN_2321282 95.7775 43 15.33407 0.08090615
ILMN_1772582 245.6578 36 17.44909 0.01941748
ILMN_1717783 575.2836 33 30.64159 0
ILMN_1814316 850.9232 39 39.41939 0
ILMN_2359168 881.6628 49 40.46215 0
ILMN_1731507 59.88141 39 11.22564 0.2394822
ILMN_1787689 88.68472 46 12.10587 0.09061489
ILMN_1745607 46.8051 52 10.84739 0.407767
ILMN_2136495 304.8595 33 20.03076 0.01941748
ILMN_1668111 52.73703 36 8.004966 0.3430421
ILMN_2295559 60.80286 44 13.37405 0.2297735
ILMN_1735045 3419.489 48 144.3689 0
ILMN_1680754 80.87243 30 13.55066 0.1132686
ILMN_2375184 57.44508 40 11.51415 0.2783172
ILMN_1659452 69.48446 47 10.48506 0.1618123

Total number of rows: 24526

Table truncated, full table size 932 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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