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Sample GSM437966 Query DataSets for GSM437966
Status Public on Jan 13, 2010
Title R/M 33/66 rep1
Sample type RNA
 
Source name Burkitts Lymphoma (Raji) Total RNA (Ambion Cat# AM7876); Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics ratio mix: 33% Raji/66% MCF-7
cell types: Burkitts Lymphoma (Raji) and Breast Adenocarcinoma (MCF-7)
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 10, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17573 Whole-Genome Gene Expression Profiling of FFPE Raji and MCF-7 Mixed Ratio Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
R/M 33/66 rep1.Avg_NBEADS
R/M 33/66 rep1.BEAD_STDERR
R/M 33/66 rep1.Detection Pval

Data table
ID_REF VALUE R/M 33/66 rep1.Avg_NBEADS R/M 33/66 rep1.BEAD_STDERR R/M 33/66 rep1.Detection Pval
ILMN_1762337 4441.219 45 259.1145 0
ILMN_2055271 129.0013 40 18.42219 0.05177994
ILMN_2383229 53.18382 27 10.40581 0.3203883
ILMN_1806310 42.02946 38 17.72242 0.4563107
ILMN_1779670 36.57166 37 12.66358 0.5469255
ILMN_2321282 108.095 43 19.25444 0.06472492
ILMN_1772582 423.7566 34 33.04732 0.009708738
ILMN_1717783 609.1022 33 63.26807 0
ILMN_1814316 1157.299 33 68.13862 0
ILMN_2359168 1156.017 31 58.0603 0
ILMN_1731507 98.32667 40 19.47092 0.0776699
ILMN_1787689 79.63898 43 16.34523 0.1165049
ILMN_1745607 66.89106 30 18.71373 0.1812298
ILMN_2136495 153.6875 32 19.77282 0.03883495
ILMN_1668111 -6.768366 35 16.83686 1
ILMN_2295559 27.6861 51 10.80075 0.6925566
ILMN_1735045 4570.022 43 306.4378 0
ILMN_1680754 71.15802 31 18.29392 0.1456311
ILMN_2375184 57.17483 45 15.85416 0.2653722
ILMN_1659452 103.8568 48 18.25914 0.07119741

Total number of rows: 24526

Table truncated, full table size 933 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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