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Sample GSM437964 Query DataSets for GSM437964
Status Public on Jan 13, 2010
Title R/M 50/50 rep1
Sample type RNA
 
Source name Burkitts Lymphoma (Raji) Total RNA (Ambion Cat# AM7876); Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics ratio mix: 50% Raji/50% MCF-7
cell types: Burkitts Lymphoma (Raji) and Breast Adenocarcinoma (MCF-7)
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 10, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17573 Whole-Genome Gene Expression Profiling of FFPE Raji and MCF-7 Mixed Ratio Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
R/M 50/50 rep1.Avg_NBEADS
R/M 50/50 rep1.BEAD_STDERR
R/M 50/50 rep1.Detection Pval

Data table
ID_REF VALUE R/M 50/50 rep1.Avg_NBEADS R/M 50/50 rep1.BEAD_STDERR R/M 50/50 rep1.Detection Pval
ILMN_1762337 4592.485 45 197.7107 0
ILMN_2055271 116.3266 29 22.86677 0.05825243
ILMN_2383229 40.28694 31 15.87732 0.5145631
ILMN_1806310 36.13094 43 14.95276 0.5825243
ILMN_1779670 29.90838 33 11.9355 0.6860842
ILMN_2321282 94.93553 36 17.22056 0.08737864
ILMN_1772582 390.185 21 27.69515 0.01294498
ILMN_1717783 534.6936 36 40.36074 0
ILMN_1814316 1466.271 35 74.46296 0
ILMN_2359168 1433.006 41 50.41783 0
ILMN_1731507 84.91618 26 15.05669 0.1035599
ILMN_1787689 82.54937 28 12.43627 0.1229773
ILMN_1745607 67.11227 45 12.67816 0.1941748
ILMN_2136495 171.457 37 12.5054 0.03559871
ILMN_1668111 22.21665 40 13.81095 0.8122978
ILMN_2295559 55.15887 49 12.59273 0.2944984
ILMN_1735045 4714.891 44 218.8822 0
ILMN_1680754 81.90853 24 13.54901 0.1229773
ILMN_2375184 80.87243 48 12.24837 0.1229773
ILMN_1659452 54.64515 54 11.01715 0.3042071

Total number of rows: 24526

Table truncated, full table size 935 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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