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Sample GSM437963 Query DataSets for GSM437963
Status Public on Jan 13, 2010
Title R/M 50/50 rep2
Sample type RNA
 
Source name Burkitts Lymphoma (Raji) Total RNA (Ambion Cat# AM7876); Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics ratio mix: 50% Raji/50% MCF-7
cell types: Burkitts Lymphoma (Raji) and Breast Adenocarcinoma (MCF-7)
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 10, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17573 Whole-Genome Gene Expression Profiling of FFPE Raji and MCF-7 Mixed Ratio Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
R/M 50/50 rep2.Avg_NBEADS
R/M 50/50 rep2.BEAD_STDERR
R/M 50/50 rep2.Detection Pval

Data table
ID_REF VALUE R/M 50/50 rep2.Avg_NBEADS R/M 50/50 rep2.BEAD_STDERR R/M 50/50 rep2.Detection Pval
ILMN_1762337 5091.346 47 254.8053 0
ILMN_2055271 142.7139 27 24.74594 0.04854369
ILMN_2383229 56.98524 21 16.85097 0.2686084
ILMN_1806310 32.4715 38 17.17526 0.6116505
ILMN_1779670 27.58168 55 10.46947 0.7184466
ILMN_2321282 89.80526 28 11.65576 0.09061489
ILMN_1772582 337.2694 40 27.52512 0.01294498
ILMN_1717783 582.5828 30 37.72865 0
ILMN_1814316 1873.213 33 103.741 0
ILMN_2359168 1695.003 31 86.95994 0
ILMN_1731507 151.6394 37 16.69975 0.04530744
ILMN_1787689 75.73788 38 12.85435 0.1294498
ILMN_1745607 103.9016 40 13.83427 0.07443365
ILMN_2136495 80.27283 21 22.62078 0.1197411
ILMN_1668111 42.28299 36 7.650679 0.4660194
ILMN_2295559 28.54204 29 8.629331 0.6860842
ILMN_1735045 4982.675 40 327.7179 0
ILMN_1680754 58.31273 30 12.64341 0.2459547
ILMN_2375184 65.29957 49 11.81336 0.1941748
ILMN_1659452 50.47606 41 11.18179 0.3592233

Total number of rows: 24526

Table truncated, full table size 934 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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