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Sample GSM437962 Query DataSets for GSM437962
Status Public on Jan 13, 2010
Title R/M 66/33 rep1
Sample type RNA
 
Source name Burkitts Lymphoma (Raji) Total RNA (Ambion Cat# AM7876); Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics ratio mix: 66% Raji/33% MCF-7
cell types: Burkitts Lymphoma (Raji) and Breast Adenocarcinoma (MCF-7)
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 10, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17573 Whole-Genome Gene Expression Profiling of FFPE Raji and MCF-7 Mixed Ratio Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
R/M 66/33 rep1.Avg_NBEADS
R/M 66/33 rep1.BEAD_STDERR
R/M 66/33 rep1.Detection Pval

Data table
ID_REF VALUE R/M 66/33 rep1.Avg_NBEADS R/M 66/33 rep1.BEAD_STDERR R/M 66/33 rep1.Detection Pval
ILMN_1762337 4540.165 49 223.6755 0
ILMN_2055271 128.5061 27 15.34678 0.05501618
ILMN_2383229 68.17702 28 13.0597 0.2135922
ILMN_1806310 24.97816 33 15.25648 0.7864078
ILMN_1779670 39.35554 38 10.18234 0.5566343
ILMN_2321282 74.79137 30 14.95154 0.1779935
ILMN_1772582 297.1497 39 16.44104 0.01941748
ILMN_1717783 468.0453 30 35.16352 0.006472492
ILMN_1814316 2536.972 40 90.047 0
ILMN_2359168 2381.884 31 95.71697 0
ILMN_1731507 172.573 33 14.99041 0.0420712
ILMN_1787689 56.53133 42 22.43244 0.3333333
ILMN_1745607 78.9725 36 11.49993 0.1521036
ILMN_2136495 171.1719 37 17.60142 0.0420712
ILMN_1668111 41.59297 28 13.25216 0.5177994
ILMN_2295559 14.70394 46 10.6658 0.9061489
ILMN_1735045 5267.674 39 298.761 0
ILMN_1680754 51.57166 31 21.82469 0.3721683
ILMN_2375184 57.97299 39 14.87798 0.3106796
ILMN_1659452 99.93521 38 14.78034 0.07443365

Total number of rows: 24526

Table truncated, full table size 936 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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