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Sample GSM437961 Query DataSets for GSM437961
Status Public on Jan 13, 2010
Title R/M 66/33 rep2
Sample type RNA
 
Source name Burkitts Lymphoma (Raji) Total RNA (Ambion Cat# AM7876); Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics ratio mix: 66% Raji/33% MCF-7
cell types: Burkitts Lymphoma (Raji) and Breast Adenocarcinoma (MCF-7)
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 10, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17573 Whole-Genome Gene Expression Profiling of FFPE Raji and MCF-7 Mixed Ratio Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
R/M 66/33 rep2.Avg_NBEADS
R/M 66/33 rep2.BEAD_STDERR
R/M 66/33 rep2.Detection Pval

Data table
ID_REF VALUE R/M 66/33 rep2.Avg_NBEADS R/M 66/33 rep2.BEAD_STDERR R/M 66/33 rep2.Detection Pval
ILMN_1762337 4919.164 46 227.8888 0
ILMN_2055271 162.1838 30 17.13323 0.05177994
ILMN_2383229 49.44792 19 10.91344 0.3656958
ILMN_1806310 31.27077 29 15.54093 0.6343042
ILMN_1779670 44.02637 31 10.8849 0.4563107
ILMN_2321282 119.0299 27 14.86266 0.05825243
ILMN_1772582 414.6238 39 17.79252 0.01294498
ILMN_1717783 467.2015 27 41.45804 0.006472492
ILMN_1814316 1794.495 24 112.4121 0
ILMN_2359168 1665.576 40 87.68791 0
ILMN_1731507 191.9253 17 15.42637 0.03236246
ILMN_1787689 56.52396 35 14.86705 0.2815534
ILMN_1745607 57.69278 30 10.40815 0.2815534
ILMN_2136495 214.6758 31 20.41809 0.02912621
ILMN_1668111 21.84565 24 16.25659 0.7928802
ILMN_2295559 18.38114 41 9.535974 0.8317152
ILMN_1735045 5064.245 39 233.3338 0
ILMN_1680754 49.68984 30 13.27081 0.3624595
ILMN_2375184 66.51662 36 9.296415 0.1877023
ILMN_1659452 77.17514 36 7.692541 0.1294498

Total number of rows: 24526

Table truncated, full table size 938 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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