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Sample GSM437960 Query DataSets for GSM437960
Status Public on Jan 13, 2010
Title R/M 75/25 rep1
Sample type RNA
 
Source name Burkitts Lymphoma (Raji) Total RNA (Ambion Cat# AM7876); Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics ratio mix: 75% Raji/25% MCF-7
cell types: Burkitts Lymphoma (Raji) and Breast Adenocarcinoma (MCF-7)
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 10, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17573 Whole-Genome Gene Expression Profiling of FFPE Raji and MCF-7 Mixed Ratio Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
R/M 75/25 rep1.Avg_NBEADS
R/M 75/25 rep1.BEAD_STDERR
R/M 75/25 rep1.Detection Pval

Data table
ID_REF VALUE R/M 75/25 rep1.Avg_NBEADS R/M 75/25 rep1.BEAD_STDERR R/M 75/25 rep1.Detection Pval
ILMN_1762337 5004.087 38 243.1966 0
ILMN_2055271 145.363 33 19.69617 0.05177994
ILMN_2383229 55.4254 44 14.0046 0.3042071
ILMN_1806310 58.16793 41 12.58922 0.2783172
ILMN_1779670 21.64626 41 12.20154 0.815534
ILMN_2321282 97.04025 35 17.34527 0.08090615
ILMN_1772582 410.0039 40 20.83271 0.01294498
ILMN_1717783 427.6602 33 28.98952 0.01294498
ILMN_1814316 2522.559 40 92.41489 0
ILMN_2359168 2384.64 39 71.97484 0
ILMN_1731507 244.2082 29 23.83057 0.03236246
ILMN_1787689 111.2046 41 15.25133 0.06796116
ILMN_1745607 30.48389 36 12.14429 0.6504855
ILMN_2136495 125.7681 25 25.79014 0.05177994
ILMN_1668111 28.44157 39 16.38 0.7055016
ILMN_2295559 18.04447 39 12.93136 0.8576052
ILMN_1735045 5225.236 46 238.4533 0
ILMN_1680754 46.45633 31 16.5495 0.4174757
ILMN_2375184 85.27033 42 14.89672 0.1197411
ILMN_1659452 100.8476 40 13.7576 0.07443365

Total number of rows: 24526

Table truncated, full table size 938 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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