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Sample GSM437959 Query DataSets for GSM437959
Status Public on Jan 13, 2010
Title R/M 75/25 rep2
Sample type RNA
 
Source name Burkitts Lymphoma (Raji) Total RNA (Ambion Cat# AM7876); Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics ratio mix: 75% Raji/25% MCF-7
cell types: Burkitts Lymphoma (Raji) and Breast Adenocarcinoma (MCF-7)
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 10, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17573 Whole-Genome Gene Expression Profiling of FFPE Raji and MCF-7 Mixed Ratio Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
R/M 75/25 rep2.Avg_NBEADS
R/M 75/25 rep2.BEAD_STDERR
R/M 75/25 rep2.Detection Pval

Data table
ID_REF VALUE R/M 75/25 rep2.Avg_NBEADS R/M 75/25 rep2.BEAD_STDERR R/M 75/25 rep2.Detection Pval
ILMN_1762337 5795.316 44 287.2958 0
ILMN_2055271 120.6986 22 18.34581 0.06148867
ILMN_2383229 48.69882 22 13.43967 0.3754045
ILMN_1806310 68.29459 35 13.22676 0.2006472
ILMN_1779670 41.6904 29 11.94737 0.5016181
ILMN_2321282 115.6624 35 9.422778 0.06472492
ILMN_1772582 508.8521 41 29.2286 0.006472492
ILMN_1717783 467.2015 36 40.95652 0.01294498
ILMN_1814316 2368.335 26 132.8391 0
ILMN_2359168 2429.335 34 88.07116 0
ILMN_1731507 198.4401 32 15.04139 0.03559871
ILMN_1787689 88.41608 29 13.70531 0.1067961
ILMN_1745607 93.46783 40 14.40829 0.1003236
ILMN_2136495 180.3429 33 16.81074 0.03883495
ILMN_1668111 35.03648 34 16.67325 0.6084142
ILMN_2295559 36.67863 51 10.86807 0.5663431
ILMN_1735045 5001.776 34 316.0005 0
ILMN_1680754 59.59327 32 14.08063 0.2621359
ILMN_2375184 65.49502 29 11.49255 0.223301
ILMN_1659452 50.19559 40 11.85265 0.355987

Total number of rows: 24526

Table truncated, full table size 937 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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