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GEO accession:
Sample GSM437951
Query DataSets for GSM437951
Status
Public on Jan 13, 2010
Title
FFPE #3-50 ng rep2
Sample type
RNA
Source name
Human ovarian tumor
Organism
Homo sapiens
Characteristics
gender: Female
tissue: Ovary
Extracted molecule
total RNA
Extraction protocol
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 2
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 10, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17572
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE #3-50 rep2.Avg_NBEADS
FFPE #3-50 rep2.BEAD_STDERR
FFPE #3-50 rep2.Detection Pval
Data table
ID_REF
VALUE
FFPE #3-50 rep2.Avg_NBEADS
FFPE #3-50 rep2.BEAD_STDERR
FFPE #3-50 rep2.Detection Pval
ILMN_1762337
390.7934
48
20.63336
0
ILMN_2055271
422.4998
25
12.38743
0
ILMN_2383229
105.8309
38
4.596619
0.03883495
ILMN_1806310
56.20835
44
3.377724
0.1326861
ILMN_1779670
1001.425
47
13.82104
0
ILMN_2321282
114.0697
35
4.112189
0.03883495
ILMN_1772582
96.14482
34
4.029388
0.03883495
ILMN_1717783
42.93704
31
3.811927
0.4595469
ILMN_1814316
8975.904
30
254.4765
0
ILMN_2359168
8434.054
40
175.7702
0
ILMN_1731507
645.1976
50
20.77818
0
ILMN_1787689
74.162
42
3.225816
0.07119741
ILMN_1745607
4720.342
43
160.6503
0
ILMN_2136495
237.2043
47
7.261617
0.006472492
ILMN_1668111
125.1917
58
4.097975
0.02588997
ILMN_2295559
43.01091
39
2.743586
0.4595469
ILMN_1735045
889.419
43
42.35889
0
ILMN_1680754
54.64516
34
4.28545
0.1553398
ILMN_2375184
222.1483
43
5.709967
0.009708738
ILMN_1659452
189.965
42
5.466613
0.01294498
Total number of rows:
24526
Table truncated, full table size
928 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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