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GEO accession:
Sample GSM437950
Query DataSets for GSM437950
Status
Public on Jan 13, 2010
Title
FFPE #2-50 ng rep2
Sample type
RNA
Source name
Human ovarian tumor
Organism
Homo sapiens
Characteristics
gender: Female
tissue: Ovary
Extracted molecule
total RNA
Extraction protocol
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 2
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 10, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17572
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE #2-50 rep2.Avg_NBEADS
FFPE #2-50 rep2.BEAD_STDERR
FFPE #2-50 rep2.Detection Pval
Data table
ID_REF
VALUE
FFPE #2-50 rep2.Avg_NBEADS
FFPE #2-50 rep2.BEAD_STDERR
FFPE #2-50 rep2.Detection Pval
ILMN_1762337
1152.756
50
26.27558
0
ILMN_2055271
447.5593
30
8.372646
0
ILMN_2383229
293.9182
36
5.313577
0.003236246
ILMN_1806310
60.50933
42
3.367628
0.1456311
ILMN_1779670
1343.901
51
20.18169
0
ILMN_2321282
86.12161
43
2.919998
0.05825243
ILMN_1772582
127.3022
37
4.723809
0.02588997
ILMN_1717783
75.20289
35
4.044434
0.07443365
ILMN_1814316
8609.566
27
258.8345
0
ILMN_2359168
8238.12
37
140.5887
0
ILMN_1731507
900.9907
43
26.75301
0
ILMN_1787689
62.61819
48
2.391263
0.1262136
ILMN_1745607
2912.806
41
70.09222
0
ILMN_2136495
253.2728
33
8.01179
0.003236246
ILMN_1668111
30.97853
50
1.930657
0.9579288
ILMN_2295559
36.64553
59
2.551598
0.7831715
ILMN_1735045
928.6658
43
31.03839
0
ILMN_1680754
58.26563
31
4.188225
0.171521
ILMN_2375184
171.8716
35
3.840451
0.01294498
ILMN_1659452
172.6433
60
4.441352
0.01294498
Total number of rows:
24526
Table truncated, full table size
925 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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